CGATools¶
The Complete Genomics Analysis Tools (cgatools) is an open source project to provide tools for downstream analysis of Complete Genomics data. The focus is to provide command line utilities, but a C++ API is available as well. The general areas of functionality include genome comparison, format conversion, and reference tools.
Environment Modules¶
Run module spider CGATools to find out what environment modules are available for this application.
System Variables¶
- HPC_CGATOOLS_DIR - installation directory
- HPC_CGATOOLS_BIN - executable directory
- HPC_CGATOOLS_REF - reference directory