CDNA_Cupcake¶
Cupcake is a set of supporting scripts for processing Iso-Seq data. It expects either high-quality isoform sequences (output of Iso-Seq clustering step) or full-length reads (output of Iso-Seq classify step).
Environment Modules¶
Run module spider CDNA_Cupcake to find out what environment modules are available for this application.
System Variables¶
- HPC_CUPCAKE_DIR - installation directory