CANVAS¶
Canvas is a tool for calling copy number variants (CNVs) from human DNA sequencing data. It can work either with germline data, or paired tumor/normal samples. Its primary input is aligned reads (in .bam format), and its primary output is a report (in a .vcf file) giving the copy number status of the genome.
Environment Modules¶
Run module spider CANVAS to find out what environment modules are available for this application.
System Variables¶
- HPC_CANVAS_DIR - installation directory
- HPC_CANVAS_BIN - executable directory