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BloomTree

BloomTree website

The Sequence Bloom Tree (SBT) is a method that will allow you to index a set of short-read sequencing experiments and then query them quickly for a given sequence. The code base provided here is an implementation of SBT written in C++ and is open source.

Environment Modules

Run module spider BloomTree to find out what environment modules are available for this application.

System Variables

  • HPC_BLOOMTREE_DIR - installation directory
  • HPC_BLOOMTREE_BIN - executables directory