Bismark¶
Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. The output can be easily imported into a genome viewer, such as SeqMonk, and enables a researcher to analyse the methylation levels of their samples straight away. It's main features are:
Environment Modules¶
Run module spider Bismark to find out what environment modules are available for this application.
System Variables¶
- HPC_BISMARK_DIR - installation directory
- HPC_BISMARK_BIN - executable directory
- HPC_BISMARK_DOC - documentation directory