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Biolite

Biolite website

BioLite is a bioinformatics framework written in Python/C++ that automates the collection and reporting of diagnostics, tracks provenance, and provides lightweight tools for building out customized analysis pipelines.

Environment Modules

Run module spider Biolite to find out what environment modules are available for this application.

System Variables

  • HPC_BIOLITE_DIR - installation directory
  • HPC_BIOLITE_BIN - executable directory
  • HPC_BIOLITE_CONF and BIOLITE_CONFIG - default configuration file. Copy it to ~/.biolite/biolite.cfg and modify for your analyses.