BBMap¶
This package includes BBMap, a short read aligner, as well as various other bioinformatic tools. It is written in pure Java, can run on any platform, and has no dependencies other than Java being installed (compiled for Java 6 and higher). All tools are efficient and multithreaded.
Environment Modules¶
Run module spider BBMap to find out what environment modules are available for this application.
System Variables¶
- HPC_BBMAP_DIR - installation directory
- HPC_BBMAP_BIN - executable directory
- HPC_BBMAP_DOC - documentation directory
- HPC_BBMAP_CONF - configuration directory