Appreci8¶
Appreci8 is a variant calling pipeline for detecting single nucleotide variants (SNVs) and short indels (up to 30 bp) in next-generation sequencing (NGS) data. By integrating and filtering the output of eight individual variant calling tools on the basis of an artifact- and a polymorphism score, appreci8 succeeds in calling variants with high sensitivity and positive predictive value even at variant allele frequencies of 1 percent.
Environment Modules¶
Run module spider Appreci8 to find out what environment modules are available for this application.
System Variables¶
- HPC_APPRECI8_DIR - installation directory
- HPC_APPRECI8_BIN - executable directory