ABruijn¶
ABruijn is a de novo assembler for PacBio and Oxford Nanopore Technologies reads. The algorithm uses an A-Bruijn graph to find the overlaps between reads and does not require them to be error-corrected. First, the algorithm produces a draft assembly by concatenating different parts of raw reads. This coarse sequence is then polished into a high quality assembly.
Environment Modules¶
Run module spider ABruijn to find out what environment modules are available for this application.
System Variables¶
- HPC_ABRUIJN_DIR - installation directory
- HPC_ABRUIJN_BIN - executable directory