ABRicate

ABRicate website

Mass screening of contigs for antimicrobial resistance or virulence genes. It comes bundled with multiple databases: NCBI, CARD, ARG-ANNOT, Resfinder, MEGARES, EcOH, PlasmidFinder, Ecoli_VF and VFDB.

Environment Modules

Run module spider ABRicate to find out what environment modules are available for this application.

System Variables

• HPC_ABRICATE_DIR - installation directory
• HPC_ABRICATE_BIN - executable directory