Figure. Reciprocal pairs per gene 
Within genes with equal numbers of transcripts in dyak_RR and dyak_FB15 (Match), the number of genes where all transcripts have reciprocal minimum matches (Match: Reciprocal Pairs, n = 5323), at least one but not all transcript pairs are reciprocal minimum matches (Match: Partial Reciprocal Pairs, n = 160), and no pairs are reciprocal minimum matches (Match: No Reciprocal Pairs, n = 0). Within genes with more transcripts in dyak_RR compared to dyak_FB15 (dyak_RR Greater), the number of genes where all transcripts in dyak_FB15 have reciprocal minimum matches to a subset of dyak_RR (dyak_RR Greater: Reciprocal Pairs, n = 476), at least one but not all transcript pairs are reciprocal minimum matches (dyak_RR Greater: Partial Reciprocal Pairs, n = 71), and no pairs are reciprocal minimum matches (dyak_RR Greater: No Reciprocal Pairs, n = 0). Within genes with more transcripts in dyak_FB15 compared to dyak_RR (dyak_FB15 Greater), the number of genes where all transcripts in dyak_RR have reciprocal minimum matches to a subset of dyak_FB15 (dyak_FB15 Greater: Reciprocal Pairs, n = 1732), at least one but not all transcript pairs are reciprocal minimum matches (dyak_FB15 Greater: Partial Reciprocal Pairs, n = 400), and no pairs are reciprocal minimum matches (dyak_FB15 Greater: No Reciprocal Pairs, n = 0). Transcriptome comparisons performed by TranD [1]. 

1. Nanni A., et al. (2021). TranD: Transcript Distance a precise nucleotide level comparison of transcript models for long reads. github 

Disclaimer:  While automated captions of TranD have been carefully constructed, users are advised to verify caption contents before use and report any errors to the TranD github.