FastQCFastQC Report
Tue 11 Oct 2022
A738_FrCx_S51_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameA738_FrCx_S51_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences897680
Sequences flagged as poor quality0
Sequence length101
%GC46

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGACAATCGCTGCGTCAATGGGGGGGGGGGGGGGGGGGGGGGGGG12600.140361821584529No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CATGGGA201.7401944E-595.037641
TCGTTGA254.6089372E-795.037641
GGTACGA201.7401944E-595.037641
TCCGCTA201.7401944E-595.037641
GAGCTTA201.7401944E-595.037641
GCGGTTA254.6089372E-795.037641
GGATGGA500.095.037641
CGCGGCA201.7401944E-595.037641
GGATGCA254.6089372E-795.037641
CGTGCGA254.6089372E-795.037641
TTGCTTA409.094947E-1295.037641
TAGGTCA201.7401944E-595.037641
TATGGGA201.7401944E-595.037641
TGTGGCA201.7401944E-595.037641
GGTCCGA254.6089372E-795.037641
GGATCGA201.7401944E-595.037641
AGGGTTA409.094947E-1295.037641
GTAGGTA500.095.037641
GCGTTGA254.6089372E-795.037641
GCTGAAA201.7401944E-595.037641
Produced by FastQC (version 0.11.4)