FastQCFastQC Report
Sun 3 Mar 2019
63_S3_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename63_S3_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31670169
Sequences flagged as poor quality0
Sequence length76
%GC72

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGCCGCGACGGGCGAGGGGCGGACGTTCGTGGCGAACGGGACCGTCCT1293680.4084853478363188No Hit
CGGCGAGGTCGGGCCGGGGTCCGCACCCCACGCCTTCCCACACGCACCGC1197640.37816028073610847No Hit
GGGACGGCGAGGTCGGGCCGGGGTCCGCACCCCACGCCTTCCCACACGCA992630.31342744018827307No Hit
CGGGGGTTCCCGCCCCCACGGCGCGGGGCGCACGCCACACGCGCGGCAGG925490.29222767961863416No Hit
GTCCGAGCCGCGACGGGCGAGGGGCGGACGTTCGTGGCGAACGGGACCGT868710.27429913619974683No Hit
CCGGGGGTTCCCGCCCCCACGGCGCGGGGCGCACGCCACACGCGCGGCAG846430.2672641247983236No Hit
CGACGCGCCGCGAGGCGAGCCGGGCGGGCGGGCGCGCGCGCGTACGCGCG661910.2090010950052082No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG594310.18765608734200315No Hit
CGGGAATCCGGCCGGCCCCGAAGACGGGGAGCCGGCGCGGCGGGGCCGGA588890.18594469767433194No Hit
GGGGGTTCCCGCCCCCACGGCGCGGGGCGCACGCCACACGCGCGGCAGGC572010.1806147608495553No Hit
CGCGGGGCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGC529970.1673404395158106No Hit
CGGCGAGCGAGAGGCGGACCGCGGTGCCCGGCCCGGGGACAGTCGCGCCG467370.14757420460875975No Hit
GGCGGTTTGAGTGAGACGAGACGAGACGCGCCCCTCCCACGCGGGGAAGG460870.14552180002575926No Hit
CCGAGCCGCGACGGGCGAGGGGCGGACGTTCGTGGCGAACGGGACCGTCC420880.13289477552203777No Hit
CCCGAACCCACCGCGATCGCTCACACGGCCCGCGCGCACCCGCCAGAGGG415420.13117075567231737No Hit
GTCGGGAGGGGCCCGGCCCCTCCCGCGCCTCCACCGCGGACTCCGCTCCC412090.13011929301671865No Hit
GGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGGAGG391100.12349160498638324No Hit
CCCGGGGGTTCCCGCCCCCACGGCGCGGGGCGCACGCCACACGCGCGGCA373660.1179848456129173No Hit
CGGGGAGAGAGGGTCGGGGGAGCGCGTCCCGGTCGCCGCGGTTCGCCGCC364850.11520304801657358No Hit
GCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCGG341440.10781123397225952No Hit
CGCGCGGCCACCTCGAGCGTTCGCGTTCAGGGCGGGGGCCCGGCCGGTGC317030.1001036653767146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)