FastQCFastQC Report
Sun 3 Mar 2019
59_S8_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename59_S8_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1051
Sequences flagged as poor quality0
Sequence length76
%GC70

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA151.4272121788772598No Hit
CTTAGTCTATCCTGTGTTGCTATAACAAATGGCCAATGGTAGGCATATGA50.47573739295908657No Hit
CCGGGGGTTCCCGCCCCCACGGCGCGGGGCGCACGCCACACGCGCGGCAG50.47573739295908657No Hit
GGAAGGCGGGTCCGGAAGGGGAAGGGTGCCGGCGGGGAGAGAGGGTCGGG30.285442435775452No Hit
CGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAGCGGGGGAGAGAGAG20.19029495718363465No Hit
GGCGGTTTGAGTGAGACGAGACGAGACGCGCCCCTCCCACGCGGGGAAGG20.19029495718363465No Hit
CGGGGGGTTTGCGCGAGCGTCGGCTCCGCCTGGGCCCTTGCGGTGCTCCT20.19029495718363465No Hit
CGACACACCACCGTTCGGCCTCGGGCACCTGAGGGACAACCCGGAGCGCT20.19029495718363465No Hit
GGGACCGGCCGCGACTGCGGCGGCGGTGGTGGGGGGAGCCGCGGGGATCG20.19029495718363465No Hit
CGCCCGTCCGCCCGTGGGTCGGGGGCGGTGGTGGGCCCGCGGGGGAGTCC20.19029495718363465No Hit
CGGGGCGGCTCCGCCGCCGCGTCCTCGGACCCGTCCCCCCGACCTCCGCG20.19029495718363465No Hit
CACGACTCGGCACGGGAGCGGGCGGAGAGCCGACTCGCGGCGGAGGGAGT20.19029495718363465No Hit
CTGCTGTGGCCATCTGTCGCCGCATCGGCATCTTCGGGCAGGATGAGGAC20.19029495718363465No Hit
CGGACGAGGAGGCGGGGGAGGGGACCGGCGTCCGGCCCCCGACCCTCGAG20.19029495718363465No Hit
CCGACGGCCGCCGCGGCGGCGGCGGCGGCGCGGCCCCGGCCGGGGAGCGG20.19029495718363465No Hit
CGACCCGCTCGCAGAGGACCCTCCTCCGCTTCCCCCTCGACGGGGTTGGG20.19029495718363465No Hit
GAGAGAGAGAGAGAGAGAGAAAGAGAAAGAAGGGCGTGTCGTTGGTGTGC20.19029495718363465No Hit
CCCGACCCTCGAGACGCCCTAGCGGGAAGGCCGGGGAGAGCGAGCGGGGC20.19029495718363465No Hit
CTCGGGCCGAGTTCCCGTGGCCGCCGCCTGCGGTCCGGGTTCCTCCCTCG20.19029495718363465No Hit
CTCGAACCCCACACCGACGAGCTCCCTCAGGACCCACGCGCGGACACCGC20.19029495718363465No Hit
GCGGGAACGACACACCACCGTTCGGCCTCGGGCACCTGAGGGACAACCCG20.19029495718363465No Hit
CGGCGAGCGAGAGGCGGACCGCGGTGCCCGGCCCGGGGACAGTCGCGCCG20.19029495718363465No Hit
GCGAGAGGCGGACCGCGGTGCCCGGCCCGGGGACAGTCGCGCCGTGCGGC20.19029495718363465No Hit
CTTCGGAGGCGCTCTGCCTCGGAAGGAAGGAGGTGGGTGGACGGGGGGGC20.19029495718363465No Hit
GGGACGGCGAGGTCGGGCCGGGGTCCGCACCCCACGCCTTCCCACACGCA20.19029495718363465No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)