FastQCFastQC Report
Thu 11 Jul 2019
50_S3_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename50_S3_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101450431
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGAACGTATTCACCGCAGTATGCTGACCTGCGATTACTAGCGATTCCG1613630.159056002433346No Hit
CCGGGAACGTATTCACCGCAGTATGCTGACCTGCGATTACTAGCGATTCC1417810.13975396516551025No Hit
CGGGAACGTATTCACCGCAGCGTTGCTGATCTGCGATTACTAGCGACTCC1087450.10719027896490652No Hit
CCTCGATCTATTAGTACCAGTCAGCTCCAAACCTCACGGCTCTTCCACAC1073490.10581423749693089No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)