FastQCFastQC Report
Thu 11 Jul 2019
50_S3_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename50_S3_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101450431
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGAACGTATTCACCGCAGTATGCTGACCTGCGATTACTAGCGATTCCG1554500.15322754025559537No Hit
CCGGGAACGTATTCACCGCAGTATGCTGACCTGCGATTACTAGCGATTCC1310850.1292108852647457No Hit
CCTCGATCTATTAGTACCAGTCAGCTCCAAACCTCACGGCTCTTCCACAC1118030.11020455891409668No Hit
GTTTAATTCGACGCAACGCGAAGAACCTTACCAGGTCTTGACATTGATGG1103100.108732904249564No Hit
CGGGAACGTATTCACCGCAGCGTTGCTGATCTGCGATTACTAGCGACTCC1045020.10300794089282875No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)