FastQCFastQC Report
Sun 3 Mar 2019
39_S11_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename39_S11_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32344873
Sequences flagged as poor quality0
Sequence length76
%GC80

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAGCGGGGGAGAGAGAGAG1862650.5758717927258519No Hit
CGGGGAGCGGGGGAGAGAGAGAGAGAGAGGGCGCGGGGTGGGGAGGGAGC1446530.44722080065053893No Hit
CGAGCCGCGACGGGCGAGGGGCGGACGTTCGTGGCGAACGGGACCGTCCT1428990.44179799376550344No Hit
GGGAGGACGGGGAGCGGGGGAGAGAGAGAGAGAGAGGGCGCGGGGTGGGG1252320.3871772815431985No Hit
GGACGGGGAGCGGGGGAGAGAGAGAGAGAGAGGGCGCGGGGTGGGGAGGG1085310.33554313229178545No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTAT961830.2973670664899503TruSeq Adapter, Index 2 (97% over 37bp)
GGGAGAGAGAGAGAGAGAGGGCGCGGGGTGGGGAGGGAGCGAGCGGCGCG955790.2954996917131194No Hit
GGGACGGCGAGGTCGGGCCGGGGTCCGCACCCCACGCCTTCCCACACGCA909440.28116975447700787No Hit
CGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAGCGGGGGAGAGAGAG862930.2667903503593908No Hit
CGGCGAGGTCGGGCCGGGGTCCGCACCCCACGCCTTCCCACACGCACCGC845540.26141391867576663No Hit
CGGGGAGCGGGGGAGAGAGAGAGAGAGAGGGCGCGGGGCGGGGAGGGAGC744250.23009829100271934No Hit
GGGGAGCGGGGGAGAGAGAGAGAGAGAGGGCGCGGGGTGGGGAGGGAGCG700890.21669276611474098No Hit
GGGAGGACGGGGAGCGGGGGAGAGAGAGAGAGAGAGGGCGCGGGGCGGGG629680.19467691216471927No Hit
CGCCGCCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAG588480.18193919017706453No Hit
GGGGAGGACGGGGAGCGGGGGAGAGAGAGAGAGAGAGGGCGCGGGGTGGG563470.17420689826174307No Hit
GGACGGGGAGCGGGGGAGAGAGAGAGAGAGAGGGCGCGGGGCGGGGAGGG556490.17204890555606758No Hit
GTCCGAGCCGCGACGGGCGAGGGGCGGACGTTCGTGGCGAACGGGACCGT540870.16721970124909752No Hit
CCCGCCGCCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGG517950.16013357047344104No Hit
CCGCGACGGGCGAGGGGCGGACGTTCGTGGCGAACGGGACCGTCCTTCTC478190.14784105041933537No Hit
GGAGGACGGGGAGCGGGGGAGAGAGAGAGAGAGAGGGCGCGGGGTGGGGA471310.1457139745146008No Hit
GGGAGAGAGAGAGAGAGAGGGCGCGGGGCGGGGAGGGAGCGAGCGGCGCG444120.13730769633876752No Hit
CGGGGAGCGGGGGAGAGAGAGAGAGAGAGAGGGCGCGGGGTGGGGAGGGA441060.13636164222997568No Hit
CGGGAATCCGGCCGGCCCCGAAGACGGGGAGCCGGCGCGGCGGGGCCGGA430070.13296388580656973No Hit
CGCGGGGTGGGGAGGGAGCGAGCGGCGCGCGCGGGGTGGGGCGGGGGAGG404640.12510174332729643No Hit
GCCGCCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAGC404450.12504300140550867No Hit
GAGAGAGAGAGGGCGCGGGGTGGGGAGGGAGCGAGCGGCGCGCGCGGGGT396730.12265622437287048No Hit
GGGAGGACGGGGAGCGGGGGAGAGAGAGAGAGAGAGAGGGCGCGGGGTGG391950.12117840128789499No Hit
GCCGCGACGGGCGAGGGGCGGACGTTCGTGGCGAACGGGACCGTCCTTCT388660.12016123853693907No Hit
AGGACGGGGAGCGGGGGAGAGAGAGAGAGAGAGGGCGCGGGGTGGGGAGG375930.11622552977716127No Hit
CGACGGGCGAGGGGCGGACGTTCGTGGCGAACGGGACCGTCCTTCTCGCT365980.11314930808354078No Hit
GCCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAGCGGG363430.11236092965954758No Hit
CGCCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAGCGG357860.11063886384713893No Hit
GGGGAGCGGGGGAGAGAGAGAGAGAGAGGGCGCGGGGCGGGGAGGGAGCG347820.1075348170326716No Hit
CCGAGCCGCGACGGGCGAGGGGCGGACGTTCGTGGCGAACGGGACCGTCC347520.10744206662984888No Hit
GGACGGGGAGCGGGGGAGAGAGAGAGAGAGAGAGGGCGCGGGGTGGGGAG347120.10731839942608523No Hit
GAGAGAGAGGGCGCGGGGTGGGGAGGGAGCGAGCGGCGCGCGCGGGGTGG342430.10586840146195658No Hit
GGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCGGGC337870.10445859533905111No Hit
CCGCCCTCCTCTTGCCGCCGCGCCCGCCCCTTCCCCCTCCCCCCGCGGGC328140.10145039060750059No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)