FastQCFastQC Report
Sun 3 Mar 2019
27_S3_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename27_S3_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTAGCAAATAATATGACCCTTGAACTCAATGGCCATCTATTAAAAGACT318.75No Hit
TTCAAGCAGACATCGAAGCCGTTCTGATTGGCCGAGGACAGGATGGGGCA212.5No Hit
CTTCGGGGCCGGCCGGATTCCAGTCGCCTCCGCCGCGCCGCTCCGCGCCG16.25No Hit
GGCATTTGGGCCTGCTGTAGTCGGTGCTGCAGCTGTTGCTGCCGGAGCTT16.25No Hit
GAAATATCTCACTAATTTAGATGTAAGAATGTGAAGGTTTTTAAATTATT16.25No Hit
GGGACAGTACGTCATGCTCTCGGAGTGCCTGGAGCGAGCCATGAAGTTTG16.25No Hit
TGAACCGGCCCAGGTCGGAAACGGAGCAGGTCAAAACTCCCGTGCTGATC16.25No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT16.25No Hit
CGGGGGACCACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAA16.25No Hit
GGAGGAGTGTGACCGCCTGGGCCCTGGCATGGCCGACATATGCAAGAACT16.25No Hit
TGCCACCTAGAGCAGAGCAGAAAAGGATCTTATGGGGTGCAATGAGGGGG16.25No Hit
ACCTGAAACACCACAGCCATATTCCCCAGCGTATGATAGCAGAATAACTA16.25No Hit
GCGGCGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG16.25No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)