FastQCFastQC Report
Sun 3 Mar 2019
11_S9_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename11_S9_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46138455
Sequences flagged as poor quality0
Sequence length76
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCGTAT12738712.760974549321168TruSeq Adapter, Index 8 (97% over 36bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCGTA901830.1954616815842663TruSeq Adapter, Index 8 (97% over 36bp)
CGGGAACGTATTCACCGCAGTATGCTGACCTGCGATTACTAGCGATTCCG514830.11158371037781824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)