SH_dif_14_S6_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SH_dif_14_S6_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	39171657
Sequences flagged as poor quality	0
Sequence length	101
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTGGGGG	3403998	8.689951512645994	TruSeq Adapter, Index 1 (97% over 36bp)
CTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGC	96308	0.24586144007132504	No Hit
CGGGCTTCTTACCCATTTAAAGTTTGAGAATAGGTTGAGATCGTTTCGGC	90504	0.23104460452106992	No Hit
CCGGGCTTCTTACCCATTTAAAGTTTGAGAATAGGTTGAGATCGTTTCGG	80193	0.2047220009099947	No Hit
GTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTC	70121	0.1790095323258855	No Hit
CGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCA	70001	0.1787031883792917	No Hit
CTGCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTC	62087	0.1584998051014283	No Hit
GCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTCAT	49421	0.12616520153844907	No Hit
CCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGA	47897	0.12227463341670738	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTGGGGG	427065	40.09099	44-45
GATCTGG	444660	39.309963	40-41
TAGATCT	446655	39.140747	38-39
TCTGGGG	445270	39.121265	42-43
ATCTGGG	444360	38.991985	42-43
TGGGGGG	457180	38.269123	44-45
GAGCACA	923465	38.2121	9
GCGATAG	468525	37.928165	34-35
CGATAGA	463950	37.874207	36-37
AGATCTG	457190	37.810234	40-41
GATAGAT	475915	37.493557	36-37
AGCGATA	477100	36.90132	34-35
AGAGCAC	957530	36.878403	8
CAGCGAT	492150	36.222538	32-33
AAGAGCA	998400	35.43997	7
ACAGCGA	499840	35.277496	32-33
CACAGCG	511650	34.90084	30-31
ATAGATC	501275	34.779938	38-39
GAAGAGC	1046185	33.90548	6
CGGAAGA	1078830	32.981983	4