L-C1-Plus_S3_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	L-C1-Plus_S3_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	27352756
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	161025	0.5886975338060998	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	133303	0.4873476003661203	No Hit
AGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	74287	0.27158872034686377	No Hit
AAAATTGTCACTAAGTGATAAAGGAGGTGGGAGTGCATTGACAACCAGGA	34540	0.12627612369298363	No Hit
TGCACTCCCACCTCCTTTATCACTTAGTGACAATTTTGGGGCCTTAGCTG	33650	0.12302233822434566	No Hit
AGTGATAAAGGAGGTGGGAGTGCATTGACAACCAGGAGGTTTGCCTAGAA	28750	0.10510823845319281	No Hit
AGAACGCTCCCCTACCGATATTTTCATATCCCACAGCTTCGGCATGTCAC	28651	0.10474630051904094	No Hit
GTCACTGGTTATAGACCCGAACCCGGGTGATCTAACCATGTCCAGGATGA	28062	0.10259295260777379	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGACGCT	11480	45.549603	1
CAGTGGT	27960	35.3634	3
GACGCTC	14805	34.68135	2
ACGCTCT	16670	30.171288	3
AGTGGTA	39190	25.462172	4
GTGCTCT	14270	24.012348	1
TGGTATC	42335	23.909552	6
GTGGTAT	42300	23.573582	5
CGCTCTT	20400	23.367939	4
TCTTCCG	69150	22.994629	1
TTCCGAT	72320	21.80748	3
CTTCCGA	74305	21.347456	2
TCCGATC	74535	21.074928	4
GGTATCA	48085	20.938663	7
CCGATCT	73505	20.74647	5
AGCAGTG	49180	20.638844	1
GTATCAA	48795	20.612474	8
TATCAAC	50425	19.869684	9
CGTGTGC	5885	19.329151	1
CGATCTC	22620	18.892776	6