FastQCFastQC Report
Tue 7 Sep 2021
L-Pool4-DC_S6_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameL-Pool4-DC_S6_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35085596
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTC1126970.3212058874530733No Hit
CTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGG910570.2595281550867769No Hit
CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATC669630.1908560994660031No Hit
GGTCCGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGA560830.15984622293433465No Hit
CTCTTTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATC458830.1307744636858955No Hit
TCGTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCC400590.11417505918953179No Hit
TTTGTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTC373140.10635133574473125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)