FastQCFastQC Report
Wed 5 Aug 2020
SRR942881_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR942881_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17530880
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGCTGTAGGCACCATCAATTCG5710513.2574006553008177No Hit
ACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTA3404381.9419333199474298No Hit
TGCTTGGACTACATATGGTTGAGGGTTGTACTGTAGGCACCATCAATTCG3126161.7832305052570094No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGCTGTAGGCACCATCAATTC1874341.0691648108936918No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATCTGTAGGCACCATCAA1124830.6416278019129673No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATTGGCTGTAGGCACCATCAATTCG1081760.6170597254672897No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAACTGTAGGCACCATCAAT1028260.5865421473422897No Hit
TTTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAA981250.5597266081337617No Hit
CGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTAT976580.5570627372955608No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATTCTGTAGGCACCATCA968690.5525621075496495No Hit
TTGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGT966940.5515638690128505No Hit
TTGTATGGCTTCTAAACCATTTAAAGTTTACTGTAGGCACCATCAATTCG945770.5394880348276869No Hit
AATTAACGATTTAAGTCCTTCTTAAATGAGGCCACTGTAGGCACCATCAA943520.5382045852803738No Hit
TAACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCG934330.5329624069071262No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCTGTAGGCACCATCAATTC810960.4625894421728972No Hit
AGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTC790250.45077600211740654No Hit
TTTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAAT750150.42790207907418226No Hit
ACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTCTGTAGGCACCATC692970.3952853479117991No Hit
AAATTAACGATTTAAGTCCTTCTTAAATGAGGCCACTGTAGGCACCATCA673080.3839396539135514No Hit
TTTGGGAACACCGCGTGTTGTTGGCCTCTGTAGGCACCATCAATTCGTAT672880.3838255695093458No Hit
TTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAAT660230.3766097309433411No Hit
TCGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTA577430.32937878760221967No Hit
TTGCGGTTAAAACGTTCGTAGTTGAACTTGTGCTGTAGGCACCATCAATT573440.3271028037383178No Hit
ATGGCAAATGTGAGATGCAGTGTATGGAGCTGTAGGCACCATCAATTCGT530630.3026830370181075No Hit
TGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGTA527450.3008690949912383No Hit
GCCCGGGTAGCTCAGTCGGTAGAGCATTGGCTGTAGGCACCATCAATTCG524860.2993917019567757No Hit
TTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATT502540.2866598824474299No Hit
ACCGCTTGGGAACACCGCGTGTTGTTGGCCTCTGTAGGCACCATCAATTC484460.276346652307243No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCGCTGTAGGCACCATCAAT478340.2728556695385514No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATTGGACTGTAGGCACCATCAATTC477090.27214264201226634No Hit
TTGAATTATTTAGTGAGGTCTCCGGACGTGCTGTAGGCACCATCAATTCG468010.2669632100613318No Hit
AGTTACATATAAAAGCATTATTTAATACAATGCTGTAGGCACCATCAATT427760.24400372371495327No Hit
TGTATGGCTTCTAAACCATTTAAAGTTTACTGTAGGCACCATCAATTCGT409710.2337076062353972No Hit
AGGGAATACGGTTCCAATTCCGTAACCTGTTGAGCTGTAGGCACCATCAA399090.22764972437207945No Hit
TAAGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAAT395640.2256817683995327No Hit
TACACACAGGGACAGCAAAAGCTCGGCCTATCGCTGTAGGCACCATCAAT370430.2113014292494159No Hit
TTGTGCTTTTATTAGGCTAAAACCAAGCTGTAGGCACCATCAATTCGTAT366960.2093220648364486No Hit
TGCACGCGCGCTACAATGAAAGTATCAACGCTGTAGGCACCATCAATTCG356210.2031900281103972No Hit
TTTGCGGTTAAAACGTTCGTAGTTGAACTTGTGCTGTAGGCACCATCAAT342610.1954322886244159No Hit
TCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTCGTA342330.19527257045852803No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCGTCCTGTAGGCACCATCA337280.19239193925233647No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACCTGTAGGCACCATCAATT331170.18890666070385514No Hit
TGCCCGGATAGCTCAGTCGGTAGAGCATTGGCTGTAGGCACCATCAATTC327170.18662497261974298No Hit
CGCCCGGCTAGCTCAGTCGGTAGAGCATGAGCTGTAGGCACCATCAATTC316670.1806355413989486No Hit
ATTTAGAAATTATAAATTTACTTAATTATTCTGTAGGCACCATCAATTCG308460.1759523766063084No Hit
ATGTATGTAAGCGTATTACCGGTGGCTGTAGGCACCATCAATTCGTATGC303950.17337977329147197No Hit
ATGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGT299310.17073301511390188No Hit
TACAACCTCAACTCATATGGGACTACCCCCTGAACTGTAGGCACCATCAA286870.1636369651723131No Hit
TTGGCAAATGTGAGATGCAGTGTATGGAGCTGTAGGCACCATCAATTCGT274900.15680901358060748No Hit
TTGGGAACACCGCGTGTTGTTGGCCTCTGTAGGCACCATCAATTCGTATG274120.1563640844042056No Hit
TTCGCAAAAGTTGACCGAACTTGATTATTTAGCTGTAGGCACCATCAATT273130.15579936660338786No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGACTGTAGGCACCATCAATT269270.1535975376022196No Hit
GGCTCGTTGGTCTAGGGGTATGATTTCCGCTTCTGTAGGCACCATCAATT268720.1532838054906542No Hit
TCGCAAAAGTTGACCGAACTTGATTATTTAGCTGTAGGCACCATCAATTC249080.14208071699766356No Hit
ACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTCTGTAGGCACCATCA235920.13457396320093457No Hit
ATTGAATTATTTAGTGAGGTCTCCGGACGTGCTGTAGGCACCATCAATTC231920.13229227511682243No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATTGGACCTGTAGGCACCATCAATT225840.12882410922897194No Hit
CGCTAGTTACATATAAAAGCATTATTTACTGTAGGCACCATCAATTCGTA224060.12780875803154204No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGACTGTAGGCACCATCAATTCG223940.12774030738901868No Hit
ATTGAATTATTTAGTGAGGTCTCCGGACGTGACTGTAGGCACCATCAATT213110.12156263690128505No Hit
GCCCGGGTAGCTCAGTCGGTAGAGCATTGGACTGTAGGCACCATCAATTC210890.1202963000146028No Hit
TTAACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTC206910.11802602037091121No Hit
ACGCGCGCTACAATGAAAGTATCAACGCTGTAGGCACCATCAATTCGTAT205090.1169878522926402No Hit
TGCACGCGCGCTACAATGAAAGTATCAACGTGCTGTAGGCACCATCAATT196670.11218489887558411No Hit
AAAATTAACGATTTAAGTCCTTCTTAAATGAGGCCACTGTAGGCACCATC190810.1088422258323598No Hit
AGCTATAAAATAAATTTTTAAAAATATTCTGTAGGCACCATCAATTCGTA190450.10863687390478972No Hit
ATGGCAAATGTGAGATGCAGTGTATGGAGCGCTGTAGGCACCATCAATTC187180.10677159389602803No Hit
TTTTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCA185160.1056193414135514No Hit
ATAAGCATATGGTATATTATTGGATAAACTGTAGGCACCATCAATTCGTA177620.10131835937500001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)