FastQCFastQC Report
Wed 5 Aug 2020
SRR942873_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR942873_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63930368
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCTGGTTGATCCTGCCAGTAGTTATATGCTTGTCTCAAAGATTAAGCC1957970.30626602994057534No Hit
AACTCTAAGCGGTGGATCACTCGGCTCATGGGTCGATGAAGAACGCAGCA1319790.20644179617423758No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATTTAAGCATATTAATTA1110720.17373902806253205No Hit
CTGTAGGCACCATCAATTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA784990.12278828114989108Illumina Single End Adapter 1 (95% over 22bp)
ATAATTTTGAACGAAAGGGAATACGGTTCCAATTCCGTAACCTGTTGAGT767450.12004467110215913No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)