FastQCFastQC Report
Wed 5 Aug 2020
SRR942872_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR942872_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17694720
Sequences flagged as poor quality0
Sequence length50
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCTGGTTGATCCTGCCAGTAGTTATATGCTTGTCTCAAAGATTAAGCC565170.3194003634982639No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA448260.2533298068576389No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATTTAAGCATATTAATTA422350.23868702076099538No Hit
AACTCTAAGCGGTGGATCACTCGGCTCATGGGTCGATGAAGAACGCAGCA356290.2013538501880787No Hit
ATAATTTTGAACGAAAGGGAATACGGTTCCAATTCCGTAACCTGTTGAGT260290.14710037796585648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)