FastQCFastQC Report
Wed 5 Aug 2020
SRR942871_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR942871_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43253760
Sequences flagged as poor quality0
Sequence length57
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAAT21097614.877636071407434No Hit
TTGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAA17447954.033857403379498No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATCTGTAGGCACCATCAATTCGTAT12984453.001923994584517No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATTCTGTAGGCACCATCAATTCGTA11997992.773860584605824No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAACTGTAGGCACCATCAATTCGTATG7335211.69585488059304No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCACTGTAGGCACCATCAATT6667941.541586211233428No Hit
TTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCACTGTAGGCACCATCAATTC5777071.3356226140802558No Hit
TGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAATTC5739811.3270083340731533No Hit
ACCGCTTGGGAACACCGCGTGTTGTTGGCCTCTGTAGGCACCATCAATTCGTATGCC4054340.937338164358428No Hit
ATGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAA3825630.884461836381392No Hit
TTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCTGTAGGCACCATCAATTCG3772660.8722155021898674No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGCTGTAGGCACCATCAATTCGTATGCCG3147880.7277702562736742No Hit
ACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTATGCCGTC2984510.6900001294685132No Hit
AGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTCGTATGCC2579050.5962603019945549No Hit
TGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGTATGCCGTC2383570.551066543116714No Hit
TTGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGTATGCCGT2328760.5383948123816288No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCTGTAGGCACCATCAATTC1915950.4429557106711648No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGACTGTAGGCACCATCAATTCGTATGC1857780.4295071688565341No Hit
TTTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATTCGTATG1681260.3886968439275568No Hit
AGCATTGTGATGGCCCTAGCGGGTGTTGACACAATGCTGTAGGCACCATCAATTCGT1599100.3697019634824811No Hit
TAACCAAACGTAATGTTACGGTGCCCAAATTAACAACCTGTAGGCACCATCAATTCG1544240.3570186730587121No Hit
TTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAATT1376860.31832145922111743No Hit
TAAGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTCGTATG1292970.2989266135475852No Hit
AACTCCATCTAAAACTAAATATAACCATGAGACCGCTGTAGGCACCATCAATTCGTA1289290.298075820460464No Hit
AACTCCATCTAAAACTAAATATAACCATGAGACCGACTGTAGGCACCATCAATTCGT1254490.29003027713660035No Hit
TTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATTCGTATGC1246880.2882708925189394No Hit
AATTAACGATTTAAGTCCTTCTTAAATGAGGCCACTGTAGGCACCATCAATTCGTAT1144140.2645180442116477No Hit
AGGGAATACGGTTCCAATTCCGTAACCTGTTGAGCTGTAGGCACCATCAATTCGTAT1137130.2628973758581913No Hit
ATGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGTATGCCGT1101220.25459520744554925No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCGTCCTGTAGGCACCATCAATTCGTA1095620.2533005223129735No Hit
AACTCTAAGCGGTGGATCACTCGGCTCATGGGTCGCTGTAGGCACCATCAATTCGTA1039940.24042765299479166No Hit
AAGCATTGTGATGGCCCTAGCGGGTGTTGACACAATGCTGTAGGCACCATCAATTCG1036840.23971095229640152No Hit
AGTTACATATAAAAGCATTATTTAATACAATGACCTGTAGGCACCATCAATTCGTAT1028580.23780129172585227No Hit
CGCTAGTTACATATAAAAGCATTATTTAATACAATGACCTGTAGGCACCATCAATTC1023470.2366198915423769No Hit
TGAACCAAACGTAATGTTACGGTGCCCAAATTAACAACCTGTAGGCACCATCAATTC969800.2242117217092803No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCGCTGTAGGCACCATCAATTCGTATG964210.22291934851444128No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATTGGACCTGTAGGCACCATCAATTCGTATGC957950.22147207549124054No Hit
TTTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAATTCGTAT949120.219430634469697No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCACTGTAGGCACCATCAATTCG948760.21934740471117425No Hit
CGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTATGCCGTCT913290.21114696155894885No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACATGCCTGTAGGCACCATCAATTCGTA912480.2109596946022727No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACATGCACTGTAGGCACCATCAATTCGT909620.2102984804095644No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATTTCTGTAGGCACCATCAATTCGT884520.20449551669034094No Hit
TCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTCGTATGCCGTC875570.20242633241595642No Hit
ATGGCAAATGTGAGATGCAGTGTATGGAGCTGTAGGCACCATCAATTCGTATGCCGT845790.1955413818359375No Hit
TAACCAAACGTAATGTTACGGTGCCCAAATTAACAACTCCTGTAGGCACCATCAATT842310.19473682750355115No Hit
TAACCGCTGAACCACTTTCATGCTTGGGATTGTGAACTGCTGTAGGCACCATCAATT823170.19031177867542612No Hit
AAATTAACGATTTAAGTCCTTCTTAAATGAGGCCACTGTAGGCACCATCAATTCGTA818660.1892690947561553No Hit
ATGGCAAATGTGAGATGCAGTGTATGGAGCGCTGTAGGCACCATCAATTCGTATGCC806440.18644390684185605No Hit
AAGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTCGTATGC778970.18009301387902463No Hit
ACCGCTGAACCACTTTCATGCTTGGGATTGTGAACTGCTGTAGGCACCATCAATTCG778940.1800860780658144No Hit
TTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAATTCGTATG763240.17645633581912878No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCTGTAGGCACCATCAATTCGT745880.17244281190814395No Hit
CTGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAA723870.16735423694957385No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACCTGTAGGCACCATCAATTCGTATGC682220.15772501627604166No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATTGGACTGTAGGCACCATCAATTCGTATGCC669370.15475417628432767No Hit
TTTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAAT663760.15345717921401514No Hit
AACTCTAAGCGGTGGATCACTCGGCTCATGGGCTGTAGGCACCATCAATTCGTATGC656320.15173709753787878No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCTGTAGGCACCATCAATTCGTATGCC656050.15167467521898675No Hit
ACGCGAAGGTCGCGGGTTCGTTCCCCTCATGGGCCACCACTGTAGGCACCATCAATT622750.14397592255563446No Hit
TAACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTATGCCG619490.14322223085345642No Hit
GTGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAA612960.14171253551136365No Hit
ACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTCTGTAGGCACCATCAATTCGT595890.13776605779474432No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCGTCACTGTAGGCACCATCAATTCGT595170.13759959827769885No Hit
ACCAAACGTAATGTTACGGTGCCCAAATTAACAACCTGTAGGCACCATCAATTCGTA593630.1372435598662405No Hit
ACTGCGATCCACTGAAGCTTATCCTTTGCTTGATGATTCGACTGTAGGCACCATCAA582830.13474666711055872No Hit
TTGCGGTTAAAACGTTCGTAGTTGAACTTGTGCTGTAGGCACCATCAATTCGTATGC574750.13287862141927081No Hit
TGTTCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAAT563720.13032855409564392No Hit
TGGAACGTACCTTGAGCATATATGCTGTGACCCGACTGTAGGCACCATCAATTCGTA555330.12838883833451706No Hit
TGGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAA547330.1265392881451231No Hit
CGCTAGTTACATATAAAAGCATTATTTAATACAATGCTGTAGGCACCATCAATTCGT544340.1258480187618371No Hit
ACCGAAAGGTTGGTGGTTCGTGTCCACCCGGGGGCGCCACTGTAGGCACCATCAATT541690.12523535526160037No Hit
AACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTATGCCGT500030.11560382265033145No Hit
TTTTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATTCGTAT477580.1104135224313447No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGCTGTAGGCACCATCAATTCGTATGCC474800.1097708037405303No Hit
ATATAAAATAATCTTATCTGGTAAAGCGCTGTAGGCACCATCAATTCGTATGCCGTC468210.10824723677201704No Hit
TTTTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAATTCGTA467270.10802991462476326No Hit
TGTTACGGTTGTTTCGCAAAAGTTGACCGAACTCTGTAGGCACCATCAATTCGTATG456600.1055630770596591No Hit
TACGGACCAAGGAGTCTAACATATGTGCAAGTTATTGGGCTGTAGGCACCATCAATT448940.10379213275331439No Hit
TTTTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAA448830.10376670143821022No Hit
GTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAATT433920.10031960227272728No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)