FastQCFastQC Report
Wed 5 Aug 2020
SRR942869_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR942869_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25329664
Sequences flagged as poor quality0
Sequence length57
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAACCTCAACTCATATGGGACTACCCCCTGAATTCTGTAGGCACCATCAATTCGTA8586283.38981204014392No Hit
TTGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAA7925903.1290979619784927No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATCTGTAGGCACCATCAATTCGTAT6778272.6760204951790914No Hit
TGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAAT6765382.670931600198092No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAACTGTAGGCACCATCAATTCGTATG6040932.3849230688571312No Hit
ACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTATGCCGTC5344762.110079312540427No Hit
TTTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAATTCGTAT2201780.8692495881508732No Hit
TGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAATTC2057240.8121860597913971No Hit
TTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCACTGTAGGCACCATCAATTC1712440.6760610800048512No Hit
ACCGCTTGGGAACACCGCGTGTTGTTGGCCTCTGTAGGCACCATCAATTCGTATGCC1710550.6753149192977846No Hit
TTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAATTCGTATG1612870.636751438945262No Hit
TAACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTATGCCG1600580.6318994203792043No Hit
TTTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATTCGTATG1543370.6093132542145052No Hit
TTTTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAATTCGTA1457780.5755228336230594No Hit
AGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTCGTATGCC1334080.5266868127425615No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGACTGTAGGCACCATCAATTCGTATGC1227290.48452675882317264No Hit
AGCATTGTGATGGCCCTAGCGGGTGTTGACACAATGCTGTAGGCACCATCAATTCGT1225610.4838635048613357No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGCTGTAGGCACCATCAATTCGTATGCCG1091840.4310519081500647No Hit
TTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCTGTAGGCACCATCAATTCG1047480.4135388452053687No Hit
TTTTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATTCGTAT968880.38250803484799484No Hit
ATGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAA959500.3788048668944049No Hit
TTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATTCGTATGC923600.36463176140038805No Hit
AACTCCATCTAAAACTAAATATAACCATGAGACCGACTGTAGGCACCATCAATTCGT832270.32857522310599935No Hit
TGGGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAAT828970.32727240282381953No Hit
AGGGAATACGGTTCCAATTCCGTAACCTGTTGAGCTGTAGGCACCATCAATTCGTAT828480.3270789537516171No Hit
TGGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAA789440.3116661950194049No Hit
TTGGGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAA761380.30058827468062743No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCACTGTAGGCACCATCAATT750170.29616263366146506No Hit
TAACCAAACGTAATGTTACGGTGCCCAAATTAACAACCTGTAGGCACCATCAATTCG745010.2941254964929657No Hit
AACTCTAAGCGGTGGATCACTCGGCTCATGGGTCGCTGTAGGCACCATCAATTCGTA727240.28711000667043984No Hit
TTGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGTATGCCGT723770.2857400714040265No Hit
AACTCCATCTAAAACTAAATATAACCATGAGACCGCTGTAGGCACCATCAATTCGTA717570.28329234844962803No Hit
TTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAATT696200.2748556001374515No Hit
AACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTATGCCGT679270.2681717372958441No Hit
CGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTATGCCGTCT666110.26297624792812097No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATTTCTGTAGGCACCATCAATTCGT665350.2626762044691947No Hit
TAAGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTCGTATG657010.25938362230150386No Hit
ATAACCTCAACTCATATGGGACTACCCCCTGAATTCTGTAGGCACCATCAATTCGTA617580.24381689389957958No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCGCTGTAGGCACCATCAATTCGTATG601860.2376107318281048No Hit
AAGCATTGTGATGGCCCTAGCGGGTGTTGACACAATGCTGTAGGCACCATCAATTCG582240.2298648730595084No Hit
ACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTCTGTAGGCACCATCAATTCGT562690.22214664987265523No Hit
TGGAACGTACCTTGAGCATATATGCTGTGACCCGACTGTAGGCACCATCAATTCGTA545410.2153246091223318No Hit
TGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGTATGCCGTC544980.21515484769162352No Hit
TAACCAAACGTAATGTTACGGTGCCCAAATTAACAACTCCTGTAGGCACCATCAATT526840.20799328407988354No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCGTCCTGTAGGCACCATCAATTCGTA526470.20784721029066944No Hit
ATGGCAAATGTGAGATGCAGTGTATGGAGCGCTGTAGGCACCATCAATTCGTATGCC526110.2077050844417044No Hit
TCGCAAAAGTTGACCGAACTTGATTATTTAGCTGTAGGCACCATCAATTCGTATGCC517220.20419536556031695No Hit
ATAACCTCAACTCATATGGGACTACCCCCTGAATCTGTAGGCACCATCAATTCGTAT488890.19301085083481564No Hit
ATAACCTCAACTCATATGGGACTACCCCCTGAACTGTAGGCACCATCAATTCGTATG441230.17419496760793984No Hit
ACTACCTCAACTCATATGGGACTACCCCCTGAATTCTGTAGGCACCATCAATTCGTA438510.17312112786020376No Hit
ATGGCAAATGTGAGATGCAGTGTATGGAGCTGTAGGCACCATCAATTCGTATGCCGT436770.17243418625687257No Hit
CGCTAGTTACATATAAAAGCATTATTTAATACAATGACCTGTAGGCACCATCAATTC429160.1694298037273609No Hit
TTTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAAT428170.169038957642707No Hit
AACTCTAAGCGGTGGATCACTCGGCTCATGGGCTGTAGGCACCATCAATTCGTATGC426290.1682967448758894No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCTGTAGGCACCATCAATTC421930.1665754429273124No Hit
ATGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTATGCCGTC414010.16344867425008086No Hit
TGAACCAAACGTAATGTTACGGTGCCCAAATTAACAACCTGTAGGCACCATCAATTC408160.16113912920439843No Hit
AGTTACATATAAAAGCATTATTTAATACAATGACCTGTAGGCACCATCAATTCGTAT393790.1554659390665427No Hit
TTTTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAA392050.15477899746321153No Hit
TCGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAA390720.15425392141009056No Hit
ATGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGTATGCCGT382730.1510995171511158No Hit
TACGGACCAAGGAGTCTAACATATGTGCAAGTTATTGGGCTGTAGGCACCATCAATT353260.1394649372372251No Hit
ACTACCTCAACTCATATGGGACTACCCCCTGAATCTGTAGGCACCATCAATTCGTAT343740.13570649812014876No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCTGTAGGCACCATCAATTCGTATGCC335060.13227968598399092No Hit
TCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTCGTATGCCGTC329460.1300688394445343No Hit
AATTAACGATTTAAGTCCTTCTTAAATGAGGCCACTGTAGGCACCATCAATTCGTAT321780.12703682133327943No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACATGCACTGTAGGCACCATCAATTCGT319050.12595903364529432No Hit
CTGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAA313300.1236889680021022No Hit
ACTACCTCAACTCATATGGGACTACCCCCTGAACTGTAGGCACCATCAATTCGTATG310850.1227217226410899No Hit
ACGCGAAGGTCGCGGGTTCGTTCCCCTCATGGGCCACCACTGTAGGCACCATCAATT308750.12189265518879365No Hit
TGGAACGTACCTTGAGCATATATGCTGTGACCCGCTGTAGGCACCATCAATTCGTAT307090.12123729710745472No Hit
AAATTAACGATTTAAGTCCTTCTTAAATGAGGCCACTGTAGGCACCATCAATTCGTA304390.12017135324021669No Hit
ACCAAACGTAATGTTACGGTGCCCAAATTAACAACCTGTAGGCACCATCAATTCGTA302130.11927911874393597No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACATGCCTGTAGGCACCATCAATTCGTA298390.11780258909079883No Hit
TCGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTATGCCGTC296850.11719460629244825No Hit
ATTGAATTATTTAGTGAGGTCTCCGGACGTGACTGTAGGCACCATCAATTCGTATGC294150.11612866242521021No Hit
TGCGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAAT292540.11549304404511643No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATTGGACCTGTAGGCACCATCAATTCGTATGC287670.11357039714383894No Hit
AGGAGTCTAACATATGTGCAAGTTATTGGGCTGTAGGCACCATCAATTCGTATGCCG282010.1113358629628881No Hit
TTGCGGTTAAAACGTTCGTAGTTGAACTTGTGCTGTAGGCACCATCAATTCGTATGC277560.10957902955206986No Hit
AAGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTCGTATGC275380.10871837857778137No Hit
TTGGCAAATGTGAGATGCAGTGTATGGAGCGCTGTAGGCACCATCAATTCGTATGCC270560.10681547137774902No Hit
GTGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCATCAA266500.10521260763664295No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCGTCACTGTAGGCACCATCAATTCGT256150.10112648947889714No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)