quad_212_S17_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	quad_212_S17_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	59517609
Sequences flagged as poor quality	0
Sequence length	101
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAATCTGGGGGGG	3501939	5.883870435722645	TruSeq Adapter, Index 15 (97% over 43bp)
CCCGAGTGTCCGGGCCCCCCGCCCCACCGGGGGCCCGCTGGTTCCTCCCG	197400	0.3316665493064414	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	151076	0.2538341215958457	No Hit
GTCCAGAGTCGCCGCCGCCGCCGGCCCCCCCGAGTGTCCGGGCCCCCCGC	127816	0.2147532505884099	No Hit
GGGGAAGAGAGGTGGCGACGACGCGGGGGACGACGGGGCCCCGCGGGGAA	127512	0.2142424773817779	No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC	110478	0.18562237606016735	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	108749	0.1827173534474478	No Hit
CGTTGATCAAAATATATCTGGGTCAATAAGATATGTTGATTTTACTTTGA	101937	0.17127200119883848	No Hit
GGGAAGAGAGGTGGCGACGACGCGGGGGACGACGGGGCCCCGCGGGGAAG	92045	0.15465170988303645	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	84313	0.1416605966143566	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	75998	0.1276899413079581	No Hit
CTGGCAAATAGTTTTGTTAAATTTAATTATTTAGGTTTATGGCTAAGCAT	73598	0.12365752125560016	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	70894	0.11911432799661022	No Hit
GGAAGAAGGAGGGGGGAAGAGAGGTGGCGACGACGCGGGGGACGACGGGG	69583	0.11691161854300969	No Hit
CCAGAGTCGCCGCCGCCGCCGGCCCCCCCGAGTGTCCGGGCCCCCCGCCC	66607	0.11191141767808582	No Hit
GGAAGAGAGGTGGCGACGACGCGGGGGACGACGGGGCCCCGCGGGGAAGA	62910	0.10569981062243276	No Hit
GTGATTATTGCCTATAGTCTGATTAACTAACAATGGTTATCCGAGTTGTT	62132	0.10439263445546007	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GAGCACA	521890	71.8513	9
AGAGCAC	526530	71.27829	8
AAGAGCA	555415	67.64561	7
CGGAAGA	559840	67.07913	4
ATCGGAA	571500	65.6541	2
TCGGAAG	573930	65.50289	3
GATCGGA	581145	64.43758	1
GAAGAGC	598015	62.822906	6
TCGCTAT	23990	47.98676	2
CTCGCTA	24070	47.963135	1
GGAAGAG	847020	44.68179	5
CGCTATG	25680	44.660934	3
AATCTGG	429405	43.999016	38-39
ACATGTC	429265	43.114483	32-33
TGTCAAT	440060	42.969097	34-35
GTCAATC	430905	42.89403	36-37
CATGTCA	441920	42.656086	32-33
CACATGT	442825	42.541306	30-31
GTCACAT	447925	42.32762	28-29
CAATCTG	435940	42.289227	38-39