quad_210_S21_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	quad_210_S21_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	57760219
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAAATCTGGGGGGG	811579	1.4050829689548094	TruSeq Adapter, Index 19 (97% over 43bp)
CCCGAGTGTCCGGGCCCCCCGCCCCACCGGGGGCCCGCTGGTTCCTCCCG	175292	0.303482228832962	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	114549	0.19831815388373095	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	93756	0.16231932915628317	No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC	90488	0.15666145587155755	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	64256	0.11124611560077359	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	63445	0.10984203505184079	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	61437	0.1063655939393166	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGCTAT	18865	50.255013	2
CTCGCTA	19910	47.986324	1
AGAGCAC	188360	46.717674	8
GAGCACA	189710	46.43246	9
CGCTATG	20820	45.534317	3
CGTGAAA	104820	42.43074	32-33
CGGAAGA	212535	41.848347	4
ATCGGAA	214020	41.57516	2
AAGAGCA	215080	41.0656	7
TCGGAAG	221350	40.28046	3
GATCGGA	221630	40.072136	1
ACGTGAA	108255	39.734924	32-33
GTCACGT	114230	39.27364	28-29
CACGTGA	115850	38.47993	30-31
TCACGTG	115380	37.481068	30-31
AGTCACG	116330	37.17504	28-29
GAAGAGC	242745	36.36768	6
GTGAAAA	121405	35.32941	34-35
AATCTGG	127680	35.2372	38-39
GAAAATC	124100	34.657604	36-37