quad_209_S20_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	quad_209_S20_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	59219751
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCATCTGGGGGGG	1004957	1.696996328133835	TruSeq Adapter, Index 18 (97% over 45bp)
CCCGAGTGTCCGGGCCCCCCGCCCCACCGGGGGCCCGCTGGTTCCTCCCG	171484	0.289572308400959	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	129373	0.21846258691631446	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	102512	0.1731044090340738	No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC	102289	0.1727278454784452	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	72651	0.12268035372185201	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	69820	0.11789985405375987	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	66690	0.1126144552684796	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GAGCACA	209020	52.31871	9
AGAGCAC	210210	51.9898	8
TCGCTAT	21845	49.521755	2
CTCGCTA	22630	48.457775	1
CGGAAGA	229360	47.64479	4
ATCGGAA	229200	47.62138	2
AAGAGCA	238210	46.033672	7
GATCGGA	237035	46.011536	1
TCGGAAG	237910	45.996582	3
CGCTATG	23905	45.03492	3
CGTCCGC	128160	42.776005	32-33
ACGTCCG	126015	42.588512	32-33
TCCGCAT	129315	42.558628	34-35
GAAGAGC	261015	41.9622	6
GTCCGCA	129705	41.199135	34-35
GTCACGT	135220	40.70113	28-29
CCGCATC	132410	40.54437	36-37
CGCATCT	136230	40.20491	36-37
TCACGTC	137570	39.221855	30-31
AGTCACG	137155	39.150784	28-29