quad_205_S18_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	quad_205_S18_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	62580546
Sequences flagged as poor quality	0
Sequence length	101
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCATCTGGGGGGG	1710326	2.732999485175473	TruSeq Adapter, Index 16 (97% over 43bp)
CCCGAGTGTCCGGGCCCCCCGCCCCACCGGGGGCCCGCTGGTTCCTCCCG	201718	0.3223333973468368	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	140749	0.22490855225200496	No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC	117642	0.18798493704417343	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	104470	0.1669368624556264	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	69522	0.1110920316994358	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	65838	0.10520521824785613	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	65411	0.10452289757906554	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGAGCAC	285995	64.7491	8
GAGCACA	287095	64.45876	9
ATCGGAA	299295	61.906605	2
CGGAAGA	303275	61.06601	4
GATCGGA	306060	60.422405	1
TCGGAAG	311135	59.6411	3
AAGAGCA	313845	59.19641	7
GAAGAGC	337705	54.972454	6
TCGCTAT	24375	50.923668	2
CTCGCTA	25550	49.158005	1
CGCTATG	27060	45.85236	3
CACCCGT	212690	43.721996	30-31
ACCCGTC	208380	43.656414	32-33
CGTCCAT	218520	42.68034	34-35
CCGTCCA	212775	42.632473	34-35
CCCGTCC	218385	42.55044	32-33
TCACCCG	228385	40.132515	30-31
GGAAGAG	473105	39.4813	5
CGTCTGA	234280	39.18422	16-17
ACGTCTG	242245	38.4042	14-15