Martian Runtime - '3.1.0-v3.2.3'
2019-10-01 11:30:30 [build  ] Built with Go version go1.12.5
2019-10-01 11:30:30 [cmdline] mrp __tdtomato_run2.mro tdtomato_run2
2019-10-01 11:30:30 [pid    ] 57249
2019-10-01 11:30:30 [environ] SLURM_NODELIST=c5a-s28
2019-10-01 11:30:30 [environ] SLURM_JOB_NAME=cellrangercount
2019-10-01 11:30:30 [environ] XDG_SESSION_ID=299854
2019-10-01 11:30:30 [environ] SLURM_TOPOLOGY_ADDR=ibswt1-1.ibswt2-4.ibswc0e.ibswc5b.c5a-s28
2019-10-01 11:30:30 [environ] HOSTNAME=c5a-s28
2019-10-01 11:30:30 [environ] SLURM_PRIO_PROCESS=0
2019-10-01 11:30:30 [environ] SLURM_NODE_ALIASES=(null)
2019-10-01 11:30:30 [environ] TERM=xterm-256color
2019-10-01 11:30:30 [environ] SHELL=/bin/bash
2019-10-01 11:30:30 [environ] SLURM_JOB_QOS=ewang burst qos
2019-10-01 11:30:30 [environ] TMPDIR=/scratch/local/42029955
2019-10-01 11:30:30 [environ] SLURM_TOPOLOGY_ADDR_PATTERN=switch.switch.switch.switch.node
2019-10-01 11:30:30 [environ] SSH_CLIENT=10.16.65.40 52603 22
2019-10-01 11:30:30 [environ] SSH_TTY=/dev/pts/136
2019-10-01 11:30:30 [environ] LC_ALL=C
2019-10-01 11:30:30 [environ] SLURM_MEM_PER_CPU=40960
2019-10-01 11:30:30 [environ] PYTHONUSERBASE=/apps/cellranger/3.1.0/cellranger-cs/3.1.0/lib
2019-10-01 11:30:30 [environ] SLURM_NNODES=1
2019-10-01 11:30:30 [environ] USER=lancetdenes
2019-10-01 11:30:30 [environ] LD_LIBRARY_PATH=
2019-10-01 11:30:30 [environ] TENX_SUBCMD=count
2019-10-01 11:30:30 [environ] SLURM_JOBID=42029955
2019-10-01 11:30:30 [environ] TENX_PRODUCT=cellranger
2019-10-01 11:30:30 [environ] SLURM_NTASKS=1
2019-10-01 11:30:30 [environ] SLURM_TASKS_PER_NODE=1
2019-10-01 11:30:30 [environ] PATH=/apps/cellranger/3.1.0/cellranger-tiny-fastq/3.0.0:/apps/cellranger/3.1.0/cellranger-tiny-ref/3.0.0:/apps/cellranger/3.1.0/miniconda-cr-cs/4.3.21-miniconda-cr-cs-c10/bin:/apps/cellranger/3.1.0/cellranger-cs/3.1.0/lib/bin:/apps/cellranger/3.1.0/cellranger-cs/3.1.0/tenkit/lib/bin:/apps/cellranger/3.1.0/cellranger-cs/3.1.0/tenkit/bin:/apps/cellranger/3.1.0/cellranger-cs/3.1.0/bin:/apps/cellranger/3.1.0/lz4/v1.8.1.2:/apps/cellranger/3.1.0/martian-cs/v3.2.3/bin:/apps/cellranger/3.1.0/STAR/5dda596:/apps/cellranger/3.1.0/cellranger-tiny-fastq/3.0.0:/apps/cellranger/3.1.0/cellranger-tiny-ref/3.0.0:/apps/cellranger/3.1.0/miniconda-cr-cs/4.3.21-miniconda-cr-cs-c10/bin:/apps/cellranger/3.1.0/cellranger-cs/3.1.0/lib/bin:/apps/cellranger/3.1.0/cellranger-cs/3.1.0/tenkit/lib/bin:/apps/cellranger/3.1.0/cellranger-cs/3.1.0/tenkit/bin:/apps/cellranger/3.1.0/cellranger-cs/3.1.0/bin:/apps/cellranger/3.1.0/lz4/v1.8.1.2:/apps/cellranger/3.1.0/martian-cs/v3.2.3/bin:/apps/cellranger/3.1.0/STAR/5dda596:/apps/cellranger/3.1.0:/apps/gcc/5.2.0/bcl2fastq/2.20.0.422/bin:/apps/compilers/gcc/5.2.0/bin:/apps/maven/3.5.0/bin:/apps/java/jdk-9.0.1/ant/bin:/apps/java/jdk-9.0.1/bin:/apps/ufrc/share/man:/apps/ufrc/bin:/home/lancetdenes/.local/bin:/opt/slurm/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/bin:/opt/dell/srvadmin/bin
2019-10-01 11:30:30 [environ] SLURM_WORKING_CLUSTER=hipergator:vslurm:6817:8704:109
2019-10-01 11:30:30 [environ] SLURM_JOB_ID=42029955
2019-10-01 11:30:30 [environ] SLURM_CPUS_PER_TASK=4
2019-10-01 11:30:30 [environ] SLURM_JOB_USER=lancetdenes
2019-10-01 11:30:30 [environ] PWD=/ufrc/ewang/lancetdenes/libLTD
2019-10-01 11:30:30 [environ] JAVA_HOME=/apps/java/jdk-9.0.1
2019-10-01 11:30:30 [environ] LANG=en_US.UTF-8
2019-10-01 11:30:30 [environ] SLURM_JOB_UID=4180
2019-10-01 11:30:30 [environ] SLURM_NODEID=0
2019-10-01 11:30:30 [environ] SLURM_SUBMIT_DIR=/ufrc/ewang/lancetdenes/libLTD
2019-10-01 11:30:30 [environ] SLURM_TASK_PID=57120
2019-10-01 11:30:30 [environ] SLURM_NPROCS=1
2019-10-01 11:30:30 [environ] SLURM_CPUS_ON_NODE=4
2019-10-01 11:30:30 [environ] SLURM_PROCID=0
2019-10-01 11:30:30 [environ] ENVIRONMENT=BATCH
2019-10-01 11:30:30 [environ] SLURM_JOB_NODELIST=c5a-s28
2019-10-01 11:30:30 [environ] TENX_REFDATA=/ufrc/data/reference/cellranger/latest
2019-10-01 11:30:30 [environ] SHLVL=5
2019-10-01 11:30:30 [environ] HOME=/home/lancetdenes
2019-10-01 11:30:30 [environ] TENX_COPYRIGHT=Copyright (c) 2019 10x Genomics, Inc.  All rights reserved.
2019-10-01 11:30:30 [environ] SLURM_LOCALID=0
2019-10-01 11:30:30 [environ] SLURM_JOB_GID=3517
2019-10-01 11:30:30 [environ] SLURM_JOB_CPUS_PER_NODE=4
2019-10-01 11:30:30 [environ] SLURM_CLUSTER_NAME=hipergator
2019-10-01 11:30:30 [environ] SLURM_GTIDS=0
2019-10-01 11:30:30 [environ] SLURM_SUBMIT_HOST=login1.ufhpc
2019-10-01 11:30:30 [environ] SLURM_JOB_PARTITION=hpg1-compute
2019-10-01 11:30:30 [environ] BASH_ENV=/apps/lmod/lmod/init/bash
2019-10-01 11:30:30 [environ] PYTHONPATH=/apps/cellranger/3.1.0/cellranger-cs/3.1.0/tenkit/lib/python:/apps/cellranger/3.1.0/cellranger-cs/3.1.0/lib/python:/apps/cellranger/3.1.0/martian-cs/v3.2.3/adapters/python
2019-10-01 11:30:30 [environ] LOGNAME=lancetdenes
2019-10-01 11:30:30 [environ] SLURM_TMPDIR=/scratch/local/42029955
2019-10-01 11:30:30 [environ] TENX_SCRIPTDIR=/apps/cellranger/3.1.0/cellranger-cs/3.1.0/bin
2019-10-01 11:30:30 [environ] TENX_BANNER=cellranger count (3.1.0)
Copyright (c) 2019 10x Genomics, Inc.  All rights reserved.
-------------------------------------------------------------------------------
2019-10-01 11:30:30 [environ] SLURM_JOB_ACCOUNT=ewang
2019-10-01 11:30:30 [environ] SSH_CONNECTION=10.16.65.40 52603 10.13.55.16 22
2019-10-01 11:30:30 [environ] SLURM_JOB_NUM_NODES=1
2019-10-01 11:30:30 [environ] TENX_VERSION=3.1.0
2019-10-01 11:30:30 [environ] XDG_RUNTIME_DIR=/run/user/4180
2019-10-01 11:30:30 [environ] BASH_FUNC_module()=() {  eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
2019-10-01 11:30:30 [environ] BASH_FUNC_ml()=() {  eval $($LMOD_DIR/ml_cmd "$@")
}
2019-10-01 11:30:30 [environ] _=/apps/cellranger/3.1.0/martian-cs/v3.2.3/bin/mrp
2019-10-01 11:30:30 [environ] MROFLAGS=--vdrmode=rolling
2019-10-01 11:30:30 [environ] MROPATH=/apps/cellranger/3.1.0/cellranger-cs/3.1.0/tenkit/mro:/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro
2019-10-01 11:30:30 [version] MRO Version=3.1.0
2019-10-01 11:30:30 [options] --jobmode=local
2019-10-01 11:30:30 [options] --maxjobs=0
2019-10-01 11:30:30 [options] --jobinterval=0
2019-10-01 11:30:30 [options] --vdrmode=rolling
2019-10-01 11:30:30 [options] --stackvars=false
2019-10-01 11:30:30 [options] --zip=false
2019-10-01 11:30:30 [options] --limit-loadavg=false
2019-10-01 11:30:30 [options] --noexit=false
2019-10-01 11:30:30 [options] --nopreflight=false
2019-10-01 11:30:30 [jobmngr] Job config = /apps/cellranger/3.1.0/martian-cs/v3.2.3/jobmanagers/config.json
2019-10-01 11:30:30 [jobmngr] Using 4 logical cores available on system.
2019-10-01 11:30:30 [jobmngr] Detected cgroup memory limit of 171798691840 bytes.  Using it instead of total system memory 270296305664
2019-10-01 11:30:30 [jobmngr] Using 153 GB, 96% of system memory.
2019-10-01 11:30:31 [filesys] Pipestance path /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2
2019-10-01 11:30:31 [filesys] Pipestance filesystem type lustre
2019-10-01 11:30:31 [filesys] 548 TB and 1,657,239,153 inodes available.
2019-10-01 11:30:31 [filesys] Pipestance filesystem lustre mount options: rw,rw,localflock,lazystatfs
2019-10-01 11:30:31 [filesys] Bin path /apps/cellranger/3.1.0/martian-cs/v3.2.3/bin
2019-10-01 11:30:31 [filesys] Bin filesystem type nfs
2019-10-01 11:30:31 [filesys] Bin filesystem nfs mount options: rw,relatime,rw,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,noacl,proto=tcp,timeo=600,retrans=2,sec=sys,mountaddr=10.13.152.221,mountvers=3,mountport=2049,mountproto=tcp,local_lock=none,addr=10.13.152.221
Serving UI at http://c5a-s28.ufhpc:35826?auth=R6SVu61x01Q4o37lszoE51BupAoKxa0RpZdt7LwRIqY

Running preflight checks (please wait)...
2019-10-01 11:30:31 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF
2019-10-01 11:30:31 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF.fork0.chnk0.main
2019-10-01 11:30:41 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF
2019-10-01 11:30:41 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL
2019-10-01 11:30:41 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL.fork0.chnk0.main
2019-10-01 11:30:41 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT
2019-10-01 11:30:41 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT.fork0.chnk0.main
2019-10-01 11:30:56 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT
2019-10-01 11:30:56 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL
2019-10-01 11:30:56 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY
2019-10-01 11:30:56 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0.main
2019-10-01 11:30:56 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION
2019-10-01 11:30:56 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main
2019-10-01 11:30:56 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES
2019-10-01 11:30:56 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES.fork0.chnk0.main
2019-10-01 11:30:56 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES
2019-10-01 11:30:56 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION
2019-10-01 11:31:06 [runtime] (progress)        ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building transcriptome...
2019-10-01 11:31:24 [runtime] (progress)        ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building kmer index...
2019-10-01 11:32:45 [runtime] (progress)        ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Mapping reads...
2019-10-01 11:33:13 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY
2019-10-01 11:33:13 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS
2019-10-01 11:33:13 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0.chnk0.main
2019-10-01 11:33:20 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS
2019-10-01 11:33:20 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY
2019-10-01 11:33:20 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.split
2019-10-01 11:33:20 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2019-10-01 11:33:20 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.split
2019-10-01 11:33:21 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2019-10-01 11:33:21 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk0.main
2019-10-01 11:33:21 [jobmngr] Need 4 threads to start the next job (3 available).  Waiting for jobs to complete.
2019-10-01 11:33:26 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY
2019-10-01 11:33:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.join
2019-10-01 11:39:28 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running
2019-10-01 11:44:17 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2019-10-01 11:44:17 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.join
2019-10-01 11:44:17 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0 join_running
2019-10-01 11:44:17 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2019-10-01 11:44:17 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS
2019-10-01 11:44:17 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.split
2019-10-01 11:44:24 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY
2019-10-01 11:44:25 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS
2019-10-01 11:44:25 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk00.main
2019-10-01 11:44:25 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk01.main
2019-10-01 11:44:25 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk02.main
2019-10-01 11:44:25 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk03.main
2019-10-01 11:44:25 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk04.main
2019-10-01 11:44:25 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk05.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk06.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk07.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk08.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk09.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk10.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk11.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk12.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk13.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk14.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk15.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk16.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk17.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk18.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk19.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk20.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk21.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk22.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk23.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk24.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk25.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk26.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk27.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk28.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk29.main
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2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk32.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk33.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk34.main
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2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk39.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk40.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk41.main
2019-10-01 11:44:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk42.main
2019-10-01 11:44:27 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk43.main
2019-10-01 11:44:27 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk44.main
2019-10-01 11:44:27 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk45.main
2019-10-01 11:50:29 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (0/46 completed)
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2019-10-01 13:38:01 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (28/46 completed)
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2019-10-01 14:51:55 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS
2019-10-01 14:51:55 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.join
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2019-10-01 14:55:55 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS
2019-10-01 14:55:55 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.split
2019-10-01 14:56:03 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS
2019-10-01 14:56:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk00.main
2019-10-01 14:56:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk01.main
2019-10-01 14:56:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk02.main
2019-10-01 14:56:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk03.main
2019-10-01 14:56:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk04.main
2019-10-01 14:56:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk05.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk06.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk07.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk08.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk09.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk10.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk11.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk12.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk13.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk14.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk15.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk16.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk17.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk18.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk19.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk20.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk21.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk22.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk23.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk24.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk25.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk26.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk27.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk28.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk29.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk30.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk31.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk32.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk33.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk34.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk35.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk36.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk37.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk38.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk39.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk40.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk41.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk42.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk43.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk44.main
2019-10-01 14:56:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk45.main
2019-10-01 14:57:31 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS
2019-10-01 14:57:31 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.join
2019-10-01 14:57:37 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS
2019-10-01 14:57:37 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS
2019-10-01 14:57:37 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.split
2019-10-01 14:57:43 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk00.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk01.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk02.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk03.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk04.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk05.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk06.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk07.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk08.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk09.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk10.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk11.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk12.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk13.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk14.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk15.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk16.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk17.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk18.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk19.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk20.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk21.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk22.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk23.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk24.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk25.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk26.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk27.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk28.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk29.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk30.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk31.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk32.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk33.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk34.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk35.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk36.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk37.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk38.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk39.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk40.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk41.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk42.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk43.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk44.main
2019-10-01 14:57:43 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk45.main
2019-10-01 15:03:02 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (1/46 completed)
2019-10-01 15:09:47 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (2/46 completed)
2019-10-01 15:15:18 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (3/46 completed)
2019-10-01 15:20:21 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (4/46 completed)
2019-10-01 15:25:24 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (5/46 completed)
2019-10-01 15:32:09 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (6/46 completed)
2019-10-01 15:37:10 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (8/46 completed)
2019-10-01 15:43:40 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (9/46 completed)
2019-10-01 15:50:08 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (10/46 completed)
2019-10-01 15:56:58 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (12/46 completed)
2019-10-01 16:03:26 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (13/46 completed)
2019-10-01 16:09:05 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (15/46 completed)
2019-10-01 16:15:47 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (16/46 completed)
2019-10-01 16:21:28 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (17/46 completed)
2019-10-01 16:28:04 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (18/46 completed)
2019-10-01 16:34:32 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (19/46 completed)
2019-10-01 16:41:30 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (21/46 completed)
2019-10-01 16:47:59 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (22/46 completed)
2019-10-01 16:53:01 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (24/46 completed)
2019-10-01 16:59:30 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (25/46 completed)
2019-10-01 17:06:04 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (26/46 completed)
2019-10-01 17:11:32 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (27/46 completed)
2019-10-01 17:18:03 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (29/46 completed)
2019-10-01 17:24:36 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (30/46 completed)
2019-10-01 17:29:43 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (32/46 completed)
2019-10-01 17:36:10 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (33/46 completed)
2019-10-01 17:42:40 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (34/46 completed)
2019-10-01 17:49:52 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (35/46 completed)
2019-10-01 17:54:55 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (36/46 completed)
2019-10-01 18:01:26 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (37/46 completed)
2019-10-01 18:09:03 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (38/46 completed)
2019-10-01 18:15:06 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (39/46 completed)
2019-10-01 18:21:41 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (40/46 completed)
2019-10-01 18:28:07 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (41/46 completed)
2019-10-01 18:35:00 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (42/46 completed)
2019-10-01 18:41:19 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (43/46 completed)
2019-10-01 18:46:58 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (44/46 completed)
2019-10-01 18:49:25 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS
2019-10-01 18:49:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.join
2019-10-01 18:49:34 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS
2019-10-01 18:49:40 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS
2019-10-01 18:49:40 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.split
2019-10-01 18:49:46 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk00.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk01.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk02.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk03.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk04.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk05.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk06.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk07.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk08.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk09.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk10.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk11.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk12.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk13.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk14.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk15.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk16.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk17.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk18.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk19.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk20.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk21.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk22.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk23.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk24.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk25.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk26.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk27.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk28.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk29.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk30.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk31.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk32.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk33.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk34.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk35.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk36.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk37.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk38.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk39.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk40.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk41.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk42.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk43.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk44.main
2019-10-01 18:49:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk45.main
2019-10-01 18:55:46 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (0/46 completed)
2019-10-01 19:01:49 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (0/46 completed)
2019-10-01 19:07:28 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (4/46 completed)
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2019-10-01 19:46:46 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (14/46 completed)
2019-10-01 19:51:48 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (16/46 completed)
2019-10-01 19:56:49 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (16/46 completed)
2019-10-01 20:01:52 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (18/46 completed)
2019-10-01 20:07:00 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (20/46 completed)
2019-10-01 20:12:44 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (20/46 completed)
2019-10-01 20:18:00 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (23/46 completed)
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2019-10-01 20:28:19 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (24/46 completed)
2019-10-01 20:33:49 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (28/46 completed)
2019-10-01 20:38:53 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (28/46 completed)
2019-10-01 20:44:26 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (29/46 completed)
2019-10-01 20:49:29 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (32/46 completed)
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2019-10-01 21:01:04 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (36/46 completed)
2019-10-01 21:06:18 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (36/46 completed)
2019-10-01 21:11:43 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (38/46 completed)
2019-10-01 21:17:03 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (40/46 completed)
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2019-10-01 21:27:39 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (43/46 completed)
2019-10-01 21:33:38 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (44/46 completed)
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2019-10-01 21:38:17 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.join
2019-10-01 21:44:19 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 join_running
2019-10-01 21:50:18 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 join_running
2019-10-01 21:56:19 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 join_running
2019-10-01 21:56:53 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS
2019-10-01 21:56:59 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC
2019-10-01 21:56:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.split
2019-10-01 21:57:07 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk00.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk01.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk02.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk03.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk04.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk05.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk06.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk07.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk08.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk09.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk10.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk11.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk12.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk13.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk14.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk15.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk16.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk17.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk18.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk19.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk20.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk21.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk22.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk23.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk24.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk25.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk26.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk27.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk28.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk29.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk30.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk31.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk32.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk33.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk34.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk35.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk36.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk37.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk38.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk39.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk40.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk41.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk42.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk43.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk44.main
2019-10-01 21:57:08 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk45.main
2019-10-01 22:03:09 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0 chunks running (0/46 completed)
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2019-10-02 00:21:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.join
2019-10-02 00:21:09 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC
2019-10-02 00:21:13 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC
2019-10-02 00:21:13 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.split
2019-10-02 00:21:19 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC
2019-10-02 00:21:19 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk00.main
2019-10-02 00:21:19 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk01.main
2019-10-02 00:21:19 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk02.main
2019-10-02 00:21:19 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk03.main
2019-10-02 00:21:19 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk04.main
2019-10-02 00:21:19 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk05.main
2019-10-02 00:21:19 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk06.main
2019-10-02 00:21:19 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk07.main
2019-10-02 00:21:19 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk08.main
2019-10-02 00:21:19 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk09.main
2019-10-02 00:21:19 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk10.main
2019-10-02 00:21:19 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk11.main
2019-10-02 00:21:19 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk12.main
2019-10-02 00:21:20 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk13.main
2019-10-02 00:21:20 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk14.main
2019-10-02 00:21:20 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk15.main
2019-10-02 00:21:20 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk16.main
2019-10-02 00:27:21 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0 chunks running (0/17 completed)
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2019-10-02 01:14:41 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0 chunks running (11/17 completed)
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2019-10-02 01:31:09 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0 chunks running (16/17 completed)
2019-10-02 01:33:20 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC
2019-10-02 01:33:20 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.join
2019-10-02 01:38:36 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC
2019-10-02 01:38:41 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES
2019-10-02 01:38:41 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.split
2019-10-02 01:39:55 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES
2019-10-02 01:39:55 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk00.main
2019-10-02 01:39:55 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk01.main
2019-10-02 01:39:55 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk02.main
2019-10-02 01:39:55 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk03.main
2019-10-02 01:39:55 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk04.main
2019-10-02 01:39:56 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk05.main
2019-10-02 01:39:56 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk06.main
2019-10-02 01:39:56 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk07.main
2019-10-02 01:39:56 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk08.main
2019-10-02 01:39:56 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk09.main
2019-10-02 01:39:56 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk10.main
2019-10-02 01:39:56 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk11.main
2019-10-02 01:39:56 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk12.main
2019-10-02 01:39:56 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk13.main
2019-10-02 01:39:57 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk14.main
2019-10-02 01:39:57 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk15.main
2019-10-02 01:39:57 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk16.main
2019-10-02 01:39:57 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk17.main
2019-10-02 01:39:57 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk18.main
2019-10-02 01:39:57 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk19.main
2019-10-02 01:39:57 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk20.main
2019-10-02 01:39:57 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk21.main
2019-10-02 01:39:57 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk22.main
2019-10-02 01:39:57 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk23.main
2019-10-02 01:39:57 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk24.main
2019-10-02 01:39:58 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk25.main
2019-10-02 01:39:58 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk26.main
2019-10-02 01:39:58 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk27.main
2019-10-02 01:39:58 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk28.main
2019-10-02 01:39:58 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk29.main
2019-10-02 01:39:58 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk30.main
2019-10-02 01:39:58 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk31.main
2019-10-02 01:39:58 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk32.main
2019-10-02 01:39:58 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk33.main
2019-10-02 01:39:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk34.main
2019-10-02 01:39:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk35.main
2019-10-02 01:39:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk36.main
2019-10-02 01:39:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk37.main
2019-10-02 01:39:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk38.main
2019-10-02 01:39:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk39.main
2019-10-02 01:39:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk40.main
2019-10-02 01:39:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk41.main
2019-10-02 01:39:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk42.main
2019-10-02 01:39:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk43.main
2019-10-02 01:40:00 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk44.main
2019-10-02 01:40:00 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk45.main
2019-10-02 01:40:00 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk46.main
2019-10-02 01:40:00 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk47.main
2019-10-02 01:40:00 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk48.main
2019-10-02 01:40:00 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk49.main
2019-10-02 01:40:00 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk50.main
2019-10-02 01:40:00 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk51.main
2019-10-02 01:45:18 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0 chunks running (4/52 completed)
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2019-10-02 02:25:14 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.join
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2019-10-02 02:25:56 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS
2019-10-02 02:25:56 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.split
2019-10-02 02:25:56 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES
2019-10-02 02:25:56 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.split
2019-10-02 02:26:03 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk00.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk01.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk02.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk03.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk04.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk05.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk06.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk07.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk08.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk09.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk10.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk11.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk12.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk13.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk14.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk15.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk16.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk17.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk18.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk19.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk20.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk21.main
2019-10-02 02:26:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk22.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk23.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk24.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk25.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk26.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk27.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk28.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk29.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk30.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk31.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk32.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk33.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk34.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk35.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk36.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk37.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk38.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk39.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk40.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk41.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk42.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk43.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk44.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk45.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk46.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk47.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk48.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk49.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk50.main
2019-10-02 02:26:04 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk51.main
2019-10-02 02:26:06 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES
2019-10-02 02:26:06 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk00.main
2019-10-02 02:26:06 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk01.main
2019-10-02 02:26:06 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk02.main
2019-10-02 02:26:06 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk03.main
2019-10-02 02:26:06 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk04.main
2019-10-02 02:26:06 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk05.main
2019-10-02 02:26:06 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk06.main
2019-10-02 02:26:06 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk07.main
2019-10-02 02:26:06 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk08.main
2019-10-02 02:26:06 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk09.main
2019-10-02 02:26:07 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk10.main
2019-10-02 02:26:07 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk11.main
2019-10-02 02:26:07 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk12.main
2019-10-02 02:26:07 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk13.main
2019-10-02 02:26:07 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk14.main
2019-10-02 02:26:07 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk15.main
2019-10-02 02:26:07 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk16.main
2019-10-02 02:26:07 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk17.main
2019-10-02 02:26:07 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk18.main
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2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk18.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk19.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk20.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk21.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk22.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk23.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk24.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk25.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk26.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk27.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk28.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk29.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk30.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk31.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk32.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk33.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk34.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk35.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk36.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk37.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk38.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk39.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk40.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk41.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk42.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk43.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk44.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk45.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk46.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk47.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk48.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk49.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk50.main
2019-10-02 06:27:59 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk51.main
2019-10-02 06:28:00 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT
2019-10-02 06:28:00 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2019-10-02 06:28:00 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split
2019-10-02 06:33:10 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (3/52 completed)
2019-10-02 06:39:42 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (8/52 completed)
2019-10-02 06:44:42 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (12/52 completed)
2019-10-02 06:49:54 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (16/52 completed)
2019-10-02 06:54:56 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (20/52 completed)
2019-10-02 07:00:22 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (24/52 completed)
2019-10-02 07:05:42 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (29/52 completed)
2019-10-02 07:10:47 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (32/52 completed)
2019-10-02 07:15:55 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (36/52 completed)
2019-10-02 07:20:59 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (40/52 completed)
2019-10-02 07:26:10 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (44/52 completed)
2019-10-02 07:30:08 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0 split_running
2019-10-02 07:30:13 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2019-10-02 07:30:13 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join
2019-10-02 07:30:33 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2019-10-02 07:30:33 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2019-10-02 07:30:33 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split
2019-10-02 07:30:33 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA
2019-10-02 07:30:33 [runtime] (disabled)        ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA
2019-10-02 07:30:33 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2019-10-02 07:30:33 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.split
2019-10-02 07:30:33 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH
2019-10-02 07:30:33 [runtime] (disabled)        ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH
2019-10-02 07:30:39 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2019-10-02 07:30:39 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join
2019-10-02 07:30:46 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2019-10-02 07:30:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main
2019-10-02 07:30:52 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2019-10-02 07:31:17 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (49/52 completed)
2019-10-02 07:31:27 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2019-10-02 07:31:27 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.join
2019-10-02 07:31:34 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2019-10-02 07:31:34 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT
2019-10-02 07:31:34 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main
2019-10-02 07:31:39 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT
2019-10-02 07:31:39 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2019-10-02 07:31:39 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split
2019-10-02 07:31:39 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP
2019-10-02 07:31:39 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.split
2019-10-02 07:31:39 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2019-10-02 07:31:39 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split
2019-10-02 07:31:39 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2019-10-02 07:31:39 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split
2019-10-02 07:31:46 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2019-10-02 07:31:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main
2019-10-02 07:31:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk1.main
2019-10-02 07:31:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk2.main
2019-10-02 07:31:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk3.main
2019-10-02 07:31:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk4.main
2019-10-02 07:31:47 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk5.main
2019-10-02 07:31:47 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk6.main
2019-10-02 07:31:47 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk7.main
2019-10-02 07:31:47 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk8.main
2019-10-02 07:31:53 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP
2019-10-02 07:31:53 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main
2019-10-02 07:31:53 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2019-10-02 07:31:53 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main
2019-10-02 07:32:00 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2019-10-02 07:32:00 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main
2019-10-02 07:32:39 [jobmngr] Need 4 threads to start the next job (1 available).  Waiting for jobs to complete.
2019-10-02 07:32:40 [jobmngr] Need 4 threads to start the next job (2 available).  Waiting for jobs to complete.
2019-10-02 07:32:41 [jobmngr] Need 4 threads to start the next job (3 available).  Waiting for jobs to complete.
2019-10-02 07:32:41 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2019-10-02 07:32:41 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join
2019-10-02 07:33:01 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES
2019-10-02 07:33:02 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.join
2019-10-02 07:34:03 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP
2019-10-02 07:34:03 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.join
2019-10-02 07:34:12 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2019-10-02 07:34:13 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2019-10-02 07:34:13 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join
2019-10-02 07:34:25 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP
2019-10-02 07:34:32 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2019-10-02 07:34:32 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2019-10-02 07:34:32 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split
2019-10-02 07:34:39 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2019-10-02 07:34:39 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main
2019-10-02 07:34:46 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2019-10-02 07:34:46 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join
2019-10-02 07:34:49 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2019-10-02 07:34:49 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join
2019-10-02 07:34:55 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2019-10-02 07:35:15 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2019-10-02 07:35:15 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING
2019-10-02 07:35:15 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main
2019-10-02 07:35:21 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING
2019-10-02 07:35:21 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2019-10-02 07:35:21 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split
2019-10-02 07:35:28 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2019-10-02 07:35:28 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk00.main
2019-10-02 07:35:28 [jobmngr] Need 4 threads to start the next job (3 available).  Waiting for jobs to complete.
2019-10-02 07:35:28 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk01.main
2019-10-02 07:35:28 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk02.main
2019-10-02 07:35:28 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk03.main
2019-10-02 07:35:28 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk04.main
2019-10-02 07:35:28 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk05.main
2019-10-02 07:35:28 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk06.main
2019-10-02 07:35:28 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk07.main
2019-10-02 07:35:28 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk08.main
2019-10-02 07:35:28 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk09.main
2019-10-02 07:38:05 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 join_running
2019-10-02 07:38:45 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES
2019-10-02 07:38:53 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2019-10-02 07:38:53 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.split
2019-10-02 07:40:48 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0 chunks running (0/10 completed)
2019-10-02 07:46:08 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0 chunks running (4/10 completed)
2019-10-02 07:52:24 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0 chunks running (7/10 completed)
2019-10-02 07:57:25 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2019-10-02 07:57:25 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join
2019-10-02 07:57:28 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0 split_running
2019-10-02 07:57:33 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2019-10-02 07:57:33 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk0.main
2019-10-02 07:57:33 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk1.main
2019-10-02 07:57:35 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2019-10-02 07:57:35 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2019-10-02 07:57:35 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split
2019-10-02 07:57:40 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2019-10-02 07:57:40 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main
2019-10-02 07:57:48 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2019-10-02 07:57:48 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join
2019-10-02 07:57:54 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2019-10-02 08:03:33 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0 chunks running (1/2 completed)
2019-10-02 08:09:36 [runtime] (update)          ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0 chunks running (1/2 completed)
2019-10-02 08:10:17 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2019-10-02 08:10:17 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.join
2019-10-02 08:10:26 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2019-10-02 08:10:26 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2019-10-02 08:10:26 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.split
2019-10-02 08:10:33 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2019-10-02 08:10:33 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.chnk0.main
2019-10-02 08:10:40 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2019-10-02 08:10:40 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.join
2019-10-02 08:10:47 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2019-10-02 08:10:51 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS
2019-10-02 08:10:52 [runtime] (disabled)        ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS
2019-10-02 08:10:52 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET
2019-10-02 08:10:52 [runtime] (disabled)        ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET
2019-10-02 08:10:52 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS
2019-10-02 08:10:52 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.chnk0.main
2019-10-02 08:10:52 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE
2019-10-02 08:10:52 [runtime] (disabled)        ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE
2019-10-02 08:10:52 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS
2019-10-02 08:10:52 [runtime] (disabled)        ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS
2019-10-02 08:10:52 [runtime] (disabled)        ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER
2019-10-02 08:11:34 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS
2019-10-02 08:11:34 [runtime] (ready)           ID.tdtomato_run2.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2019-10-02 08:11:34 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.split
2019-10-02 08:11:41 [runtime] (split_complete)  ID.tdtomato_run2.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2019-10-02 08:11:41 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.chnk0.main
2019-10-02 08:12:22 [runtime] (chunks_complete) ID.tdtomato_run2.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2019-10-02 08:12:22 [runtime] (run:local)       ID.tdtomato_run2.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.join
2019-10-02 08:12:29 [runtime] (join_complete)   ID.tdtomato_run2.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2019-10-02 08:12:29 [runtime] VDR killed 2354 files, 281 GB.

Outputs:
- Run summary HTML:                         /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/outs/web_summary.html
- Run summary CSV:                          /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/outs/metrics_summary.csv
- BAM:                                      /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/outs/possorted_genome_bam.bam
- BAM index:                                /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/outs/possorted_genome_bam.bam.bai
- Filtered feature-barcode matrices MEX:    /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/outs/filtered_feature_bc_matrix
- Filtered feature-barcode matrices HDF5:   /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/outs/filtered_feature_bc_matrix.h5
- Unfiltered feature-barcode matrices MEX:  /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/outs/raw_feature_bc_matrix
- Unfiltered feature-barcode matrices HDF5: /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/outs/raw_feature_bc_matrix.h5
- Secondary analysis output CSV:            /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/outs/analysis
- Per-molecule read information:            /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/outs/molecule_info.h5
- CRISPR-specific analysis:                 null
- Loupe Cell Browser file:                  /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/outs/cloupe.cloupe
- Feature Reference:                        null

2019-10-02 08:12:29 [perform] Serializing pipestance performance data.
Waiting 6 seconds for UI to do final refresh.
Pipestance completed successfully!

2019-10-02 08:12:36 Shutting down.
2019-10-02 08:12:36 [jobmngr] Highest memory usage observed: {
  "rss": 12949061632,
  "shared": 119468032,
  "vmem": 15251058688,
  "text": 17281024,
  "stack": 13745532928,
  "proc_count": 325
}
