@include "_sc_rna_analyzer_stages.mro"

call RUN_GRAPH_CLUSTERING(
    matrix_h5 = "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-udfa1947bb0/files/preprocessed_matrix_h5.h5",
    pca_h5 = "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-udfa1948a96/files/pca_h5.h5",
    num_neighbors = null,
    neighbor_a = null,
    neighbor_b = null,
    num_bcs = null,
    input_pcs = null,
    balltree_leaf_size = null,
    similarity_type = "nn",
    skip = false,
)