@include "_sc_rna_analyzer_stages.mro"

call RUN_DIFFERENTIAL_EXPRESSION(
    matrix_h5 = "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-udfa1947bb0/files/preprocessed_matrix_h5.h5",
    clustering_h5 = "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-udfa1948b73/files/clustering_h5.h5",
    skip = false,
    random_seed = null,
    max_clusters = null,
    is_antibody_only = false,
)