2019-10-02 08:11:41 [time] __start__
2019-10-02 08:11:41 [monitor] cgroup memory limit of 171798691840 bytes detected
2019-10-02 08:11:47 [info] Running crconverter: crconverter tdtomato_run2 SC_RNA_COUNTER_CS --matrix /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_h5.h5 --analysis /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-udfa19490af/files/analysis/analysis.h5 --output /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0/chnk0-udfa19493fd/files/output_for_cloupe.cloupe --description  --metrics /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-udfa19493cc/files/metrics_summary_json.json --gemgroups /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0/chnk0-udfa19493fd/files/gem_group_index_json.json
2019-10-02 08:12:22 [info] crconverter output: inputs: {name:tdtomato_run2 description: pipestanceType:1 outputPath:/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0/chnk0-udfa19493fd/files/output_for_cloupe.cloupe matrixPath:/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_h5.h5 analysisPath:/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-udfa19490af/files/analysis/analysis.h5 metricsPath:/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-udfa19493cc/files/metrics_summary_json.json aggregationPath: gemGroupsPath:/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0/chnk0-udfa19493fd/files/gem_group_index_json.json contigInfoPath: peakLocationsPath: fragmentsIndexPath: geneAnnotationsPath: geneAnnotationTypes:[]}
Converting matrix:  /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_h5.h5
Converting analysis.h5:  /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-udfa19490af/files/analysis/analysis.h5
Converting RunInfo
Wrote .cloupe file to /ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0/chnk0-udfa19493fd/files/output_for_cloupe.cloupe

2019-10-02 08:12:22 [time] __end__
