[
    {
        "name": "SC_RNA_COUNTER_CS",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS",
        "type": "pipeline",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "tdtomato_run2",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/refdata-cellranger-mm10-3.0.0",
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "no_secondary_analysis",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": null,
                                    "lanes": null,
                                    "read_path": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt",
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "sample_names": [
                                        "Tdtomato"
                                    ]
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_desc",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": 10000,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "web_summary",
                            "type": "html",
                            "valexp": "SC_RNA_COUNTER.web_summary",
                            "mode": "reference",
                            "output": "web_summary",
                            "sweep": false,
                            "sweepRootId": "web_summary",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-udfa19493cc/files/web_summary.html",
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "valexp": "SC_RNA_COUNTER.molecule_info",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "molecule_info",
                            "node": "REPORT_MOLECULES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join-udfa1947ba6/files/output.h5",
                            "waiting": false
                        },
                        {
                            "id": "cloupe",
                            "type": "cloupe",
                            "valexp": "CLOUPE_PREPROCESS.output_for_cloupe",
                            "mode": "reference",
                            "output": "output_for_cloupe",
                            "sweep": false,
                            "sweepRootId": "cloupe",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0/join-udfa19493f6/files/output_for_cloupe.cloupe",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "SC_RNA_COUNTER.feature_reference",
                            "mode": "reference",
                            "output": "feature_reference",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-udfa19493cc/files/feature_reference.csv",
                            "waiting": false
                        },
                        {
                            "id": "possorted_genome_bam_index",
                            "type": "bam.bai",
                            "valexp": "SC_RNA_COUNTER.possorted_genome_bam_index",
                            "mode": "reference",
                            "output": "index",
                            "sweep": false,
                            "sweepRootId": "possorted_genome_bam_index",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join-udfa19442f4/files/output.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary",
                            "type": "csv",
                            "valexp": "SC_RNA_COUNTER.metrics_summary_csv",
                            "mode": "reference",
                            "output": "metrics_summary_csv",
                            "sweep": false,
                            "sweepRootId": "metrics_summary",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-udfa19493cc/files/metrics_summary_csv.csv",
                            "waiting": false
                        },
                        {
                            "id": "raw_feature_bc_matrix",
                            "type": "path",
                            "valexp": "SC_RNA_COUNTER.raw_gene_bc_matrices_mex",
                            "mode": "reference",
                            "output": "matrices_mex",
                            "sweep": false,
                            "sweepRootId": "raw_feature_bc_matrix",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-udfa19442f4/files/matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "raw_feature_bc_matrix_h5",
                            "type": "h5",
                            "valexp": "SC_RNA_COUNTER.raw_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_feature_bc_matrix_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-udfa19442f4/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_bc_matrix",
                            "type": "path",
                            "valexp": "SC_RNA_COUNTER.filtered_gene_bc_matrices_mex",
                            "mode": "reference",
                            "output": "filtered_matrices_mex",
                            "sweep": false,
                            "sweepRootId": "filtered_feature_bc_matrix",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_bc_matrix_h5",
                            "type": "h5",
                            "valexp": "SC_RNA_COUNTER.filtered_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_feature_bc_matrix_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "path",
                            "valexp": "SC_RNA_COUNTER.analysis_csv",
                            "mode": "reference",
                            "output": "analysis_csv",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-udfa19490af/files/analysis_csv",
                            "waiting": false
                        },
                        {
                            "id": "crispr_analysis",
                            "type": "path",
                            "valexp": "SC_RNA_COUNTER.crispr_analysis",
                            "mode": "reference",
                            "output": "crispr_analysis",
                            "sweep": false,
                            "sweepRootId": "crispr_analysis",
                            "node": "SUMMARIZE_CRISPR_ANALYSIS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "possorted_genome_bam",
                            "type": "bam",
                            "valexp": "SC_RNA_COUNTER.possorted_genome_bam",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "possorted_genome_bam",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join-udfa19442f4/files/output.bam",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CLOUPE_PREPROCESS",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "metrics_json",
                            "type": "json",
                            "valexp": "SC_RNA_COUNTER.metrics_summary_json",
                            "mode": "reference",
                            "output": "metrics_summary_json",
                            "sweep": false,
                            "sweepRootId": "metrics_json",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-udfa19493cc/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "pipestance_type",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "pipestance_type",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": "SC_RNA_COUNTER_CS",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "path",
                            "valexp": "SC_RNA_COUNTER.analysis",
                            "mode": "reference",
                            "output": "analysis",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-udfa19490af/files/analysis",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "SC_RNA_COUNTER.filtered_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "gem_group_index_json",
                            "type": "json",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "gem_group_index_json",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "no_secondary_analysis",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "tdtomato_run2",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "valexp": "self.sample_desc",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_desc",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "aggregation_csv",
                            "type": "csv",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "aggregation_csv",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/cloupe/cloupe_preprocess"
    },
    {
        "name": "EXPAND_SAMPLE_DEF",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/EXPAND_SAMPLE_DEF",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/EXPAND_SAMPLE_DEF",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/EXPAND_SAMPLE_DEF/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/EXPAND_SAMPLE_DEF/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/EXPAND_SAMPLE_DEF/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/EXPAND_SAMPLE_DEF/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "raw_sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": null,
                                    "lanes": null,
                                    "read_path": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt",
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "sample_names": [
                                        "Tdtomato"
                                    ]
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/common/expand_sample_def"
    },
    {
        "name": "SC_RNA_COUNTER",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER",
        "type": "pipeline",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "align_threads",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "align_threads",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 4,
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "self.recovered_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": 10000,
                            "waiting": false
                        },
                        {
                            "id": "initial_reads",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "initial_reads",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filter_umis",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "filter_umis",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "allowed_chems",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "allowed_chems",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC5P-PE",
                                "SC5P-R2",
                                "SC5P-R1",
                                "SC-FB"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "EXPAND_SAMPLE_DEF.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "Tdtomato"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "primers",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "primers",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "name": "P5",
                                    "seq": "AATGATACGGCGACCACCGAGATCT"
                                },
                                {
                                    "name": "P7",
                                    "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                },
                                {
                                    "name": "R1",
                                    "seq": "ACACTCTTTCCCTACACGACG"
                                },
                                {
                                    "name": "R2",
                                    "seq": "GTGACTGGAGTTCAGACGTGTG"
                                },
                                {
                                    "name": "switch_oligo",
                                    "seq": "AAGCAGTGGTATCAACGCAGAGTACATGGG"
                                },
                                {
                                    "name": "polyA",
                                    "seq": "AAAAAAAAAAAAAAAAAAAA"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "subsample_rate",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "json",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cell_barcodes",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "library_type_filter",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "library_type_filter",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_compatibility_cutoff",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_compatibility_cutoff",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/refdata-cellranger-mm10-3.0.0",
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umi_min_qual_threshold",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umi_min_qual_threshold",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 10,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name",
                            "type": "string",
                            "valexp": "self.chemistry",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "barcode_confidence_threshold",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_confidence_threshold",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 0.975,
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "retain_fastqs",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "retain_fastqs",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "tdtomato_run2",
                            "waiting": false
                        },
                        {
                            "id": "annotation_params",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "annotation_params",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "valexp": "self.no_secondary_analysis",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "no_secondary_analysis",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "disable_preflight_local",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "disable_preflight_local",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "valexp": "self.sample_desc",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_desc",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "num_reads_to_check_barcode",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_reads_to_check_barcode",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "custom_chemistry_def",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "metrics_summary_json",
                            "type": "json",
                            "valexp": "SUMMARIZE_REPORTS.metrics_summary_json",
                            "mode": "reference",
                            "output": "metrics_summary_json",
                            "sweep": false,
                            "sweepRootId": "metrics_summary_json",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-udfa19493cc/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_mex",
                            "type": "path",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_gene_bc_matrices_mex",
                            "mode": "reference",
                            "output": "filtered_matrices_mex",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_mex",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "_BASIC_SC_RNA_COUNTER.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_type",
                            "type": "string",
                            "valexp": "CHEMISTRY_DETECTOR.chemistry_type",
                            "mode": "reference",
                            "output": "chemistry_type",
                            "sweep": false,
                            "sweepRootId": "chemistry_type",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": "SC3Pv3",
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.library_info",
                            "mode": "reference",
                            "output": "library_info",
                            "sweep": false,
                            "sweepRootId": "library_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_id": "0",
                                    "library_type": "Gene Expression"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "possorted_genome_bam",
                            "type": "bam",
                            "valexp": "_BASIC_SC_RNA_COUNTER.possorted_genome_bam",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "possorted_genome_bam",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join-udfa19442f4/files/output.bam",
                            "waiting": false
                        },
                        {
                            "id": "web_summary",
                            "type": "html",
                            "valexp": "SUMMARIZE_REPORTS.web_summary",
                            "mode": "reference",
                            "output": "web_summary",
                            "sweep": false,
                            "sweepRootId": "web_summary",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-udfa19493cc/files/web_summary.html",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "SUMMARIZE_REPORTS.feature_reference",
                            "mode": "reference",
                            "output": "feature_reference",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-udfa19493cc/files/feature_reference.csv",
                            "waiting": false
                        },
                        {
                            "id": "fastq_chunks",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.chunks",
                            "mode": "reference",
                            "output": "chunks",
                            "sweep": false,
                            "sweepRootId": "fastq_chunks",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": null,
                                        "I2": null,
                                        "R1": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt/Tdtomato_S2_L001_R1_001.fastq.gz",
                                        "R2": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt/Tdtomato_S2_L001_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "CHEMISTRY_DETECTOR.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.molecule_info",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "molecule_info",
                            "node": "REPORT_MOLECULES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join-udfa1947ba6/files/output.h5",
                            "waiting": false
                        },
                        {
                            "id": "analysis_csv",
                            "type": "path",
                            "valexp": "SC_RNA_ANALYZER.analysis_csv",
                            "mode": "reference",
                            "output": "analysis_csv",
                            "sweep": false,
                            "sweepRootId": "analysis_csv",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-udfa19490af/files/analysis_csv",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "path",
                            "valexp": "SC_RNA_ANALYZER.analysis",
                            "mode": "reference",
                            "output": "analysis",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-udfa19490af/files/analysis",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "_BASIC_SC_RNA_COUNTER.align",
                            "mode": "reference",
                            "output": "align",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": 255
                            },
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "barcode_correction_csv",
                            "type": "csv",
                            "valexp": "_BASIC_SC_RNA_COUNTER.barcode_correction_csv",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_correction_csv",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/join-udfa19437e1/files/barcode_summary.csv",
                            "waiting": false
                        },
                        {
                            "id": "possorted_genome_bam_index",
                            "type": "bam.bai",
                            "valexp": "_BASIC_SC_RNA_COUNTER.possorted_genome_bam_index",
                            "mode": "reference",
                            "output": "index",
                            "sweep": false,
                            "sweepRootId": "possorted_genome_bam_index",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join-udfa19442f4/files/output.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.barcode_summary",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_summary",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-udfa19442f4/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "raw_gene_bc_matrices_mex",
                            "type": "path",
                            "valexp": "_BASIC_SC_RNA_COUNTER.raw_gene_bc_matrices_mex",
                            "mode": "reference",
                            "output": "matrices_mex",
                            "sweep": false,
                            "sweepRootId": "raw_gene_bc_matrices_mex",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-udfa19442f4/files/matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "crispr_analysis",
                            "type": "path",
                            "valexp": "_CRISPR_ANALYZER.crispr_analysis",
                            "mode": "reference",
                            "output": "crispr_analysis",
                            "sweep": false,
                            "sweepRootId": "crispr_analysis",
                            "node": "SUMMARIZE_CRISPR_ANALYSIS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "SETUP_CHUNKS.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "read_fastqs",
                            "type": "fastq",
                            "valexp": "_BASIC_SC_RNA_COUNTER.read1s",
                            "mode": "reference",
                            "output": "read1s",
                            "sweep": false,
                            "sweepRootId": "read_fastqs",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk00-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk01-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk02-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk03-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk04-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk05-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk06-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk07-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk08-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk09-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk10-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk11-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk12-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk13-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk14-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk15-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk16-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk17-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk18-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk19-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk20-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk21-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk22-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk23-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk24-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk25-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk26-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk27-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk28-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk29-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk30-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk31-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk32-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk33-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk34-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk35-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk36-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk37-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk38-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk39-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk40-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk41-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk42-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk43-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk44-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk45-udfa193a143/files/read1s.fastq"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_csv",
                            "type": "csv",
                            "valexp": "SUMMARIZE_REPORTS.metrics_summary_csv",
                            "mode": "reference",
                            "output": "metrics_summary_csv",
                            "sweep": false,
                            "sweepRootId": "metrics_summary_csv",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-udfa19493cc/files/metrics_summary_csv.csv",
                            "waiting": false
                        },
                        {
                            "id": "raw_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.raw_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_gene_bc_matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-udfa19442f4/files/matrices_h5.h5",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CELLRANGER_PREFLIGHT",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 2,
                    "__vmem_gb": 5
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "chemistry_name",
                            "type": "string",
                            "valexp": "self.chemistry_name",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/refdata-cellranger-mm10-3.0.0",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "check_executables",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "check_executables",
                            "node": "CELLRANGER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "self.recovered_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": 10000,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "Tdtomato"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "map",
                            "valexp": "self.custom_chemistry_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "custom_chemistry_def",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "allowed_chems",
                            "type": "string",
                            "valexp": "self.allowed_chems",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "allowed_chems",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC5P-PE",
                                "SC5P-R2",
                                "SC5P-R1",
                                "SC-FB"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/common/cellranger_preflight"
    },
    {
        "name": "CELLRANGER_PREFLIGHT_LOCAL",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT_LOCAL",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT_LOCAL",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 2,
                    "__vmem_gb": 5
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT_LOCAL/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT_LOCAL/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT_LOCAL/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT_LOCAL/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "Tdtomato"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name",
                            "type": "string",
                            "valexp": "self.chemistry_name",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "check_executables",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "check_executables",
                            "node": "CELLRANGER_PREFLIGHT_LOCAL",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "self.recovered_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": 10000,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "allowed_chems",
                            "type": "string",
                            "valexp": "self.allowed_chems",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "allowed_chems",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC5P-PE",
                                "SC5P-R2",
                                "SC5P-R1",
                                "SC-FB"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "map",
                            "valexp": "self.custom_chemistry_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "custom_chemistry_def",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/refdata-cellranger-mm10-3.0.0",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/common/cellranger_preflight"
    },
    {
        "name": "CHECK_BARCODES_COMPATIBILITY",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHECK_BARCODES_COMPATIBILITY",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHECK_BARCODES_COMPATIBILITY",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 2,
                    "__vmem_gb": 5
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHECK_BARCODES_COMPATIBILITY/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHECK_BARCODES_COMPATIBILITY/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHECK_BARCODES_COMPATIBILITY/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "chunks",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.chunks",
                            "mode": "reference",
                            "output": "chunks",
                            "sweep": false,
                            "sweepRootId": "chunks",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": null,
                                        "I2": null,
                                        "R1": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt/Tdtomato_S2_L001_R1_001.fastq.gz",
                                        "R2": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt/Tdtomato_S2_L001_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "SETUP_CHUNKS.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "num_reads_to_check_barcode",
                            "type": "int",
                            "valexp": "self.num_reads_to_check_barcode",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_reads_to_check_barcode",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_compatibility_cutoff",
                            "type": "float",
                            "valexp": "self.barcode_compatibility_cutoff",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_compatibility_cutoff",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/counter/check_barcodes_compatibility"
    },
    {
        "name": "CHEMISTRY_DETECTOR",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
        "type": "pipeline",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "Tdtomato"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/refdata-cellranger-mm10-3.0.0",
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "vdj_reference_path",
                            "node": "CHEMISTRY_DETECTOR",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name_spec",
                            "type": "string",
                            "valexp": "self.chemistry_name",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "allowed_chems",
                            "type": "string",
                            "valexp": "self.allowed_chems",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "allowed_chems",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC5P-PE",
                                "SC5P-R2",
                                "SC5P-R1",
                                "SC-FB"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "tdtomato_run2",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "valexp": "DETECT_CHEMISTRY.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "summary",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0/chnk0-udfa1937130/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_type",
                            "type": "string",
                            "valexp": "DETECT_CHEMISTRY.chemistry_type",
                            "mode": "reference",
                            "output": "chemistry_type",
                            "sweep": false,
                            "sweepRootId": "chemistry_type",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": "SC3Pv3",
                            "waiting": false
                        },
                        {
                            "id": "report",
                            "type": "txt",
                            "valexp": "DETECT_CHEMISTRY.report",
                            "mode": "reference",
                            "output": "report",
                            "sweep": false,
                            "sweepRootId": "report",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0/chnk0-udfa1937130/files/report.txt",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "DETECT_CHEMISTRY.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "DETECT_CHEMISTRY",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 8,
                    "__vmem_gb": 11
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "progress",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "tdtomato_run2",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/refdata-cellranger-mm10-3.0.0",
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "valexp": "self.vdj_reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "vdj_reference_path",
                            "node": "CHEMISTRY_DETECTOR",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "Tdtomato"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name_spec",
                            "type": "string",
                            "valexp": "self.chemistry_name_spec",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "allowed_chems",
                            "type": "string",
                            "valexp": "self.allowed_chems",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "allowed_chems",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC5P-PE",
                                "SC5P-R2",
                                "SC5P-R1",
                                "SC-FB"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/chemistry_detector/detect_chemistry"
    },
    {
        "name": "DISABLE_FEATURE_STAGES",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/DISABLE_FEATURE_STAGES",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/DISABLE_FEATURE_STAGES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/DISABLE_FEATURE_STAGES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/DISABLE_FEATURE_STAGES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/DISABLE_FEATURE_STAGES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/DISABLE_FEATURE_STAGES/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "Tdtomato"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt"
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/common/disable_feature_stages"
    },
    {
        "name": "SC_RNA_ANALYZER",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER",
        "type": "pipeline",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "tsne_max_iter",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_input_pcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_input_pcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_min_dist",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_min_dist",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_input_pcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_input_pcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_theta",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_theta",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_genes",
                            "type": "csv",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "use_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "raw_matrices_h5",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.raw_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-udfa19442f4/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "cbc_knn",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_knn",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_a",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_a",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_batch_correction",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry_batch_correction",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "aggr_library_info",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "aggr_library_info",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pca_genes",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pca_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_principal_comps",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_principal_comps",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_realign_panorama",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_realign_panorama",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_mom_switch_iter",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_mom_switch_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_n_neighbors",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_n_neighbors",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_max_dims",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_max_dims",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_metric",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_metric",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "valexp": "self.no_secondary_analysis",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "no_secondary_analysis",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "num_analysis_bcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_analysis_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pca_bcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pca_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "graphclust_neighbors",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "graphclust_neighbors",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_stop_lying_iter",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_stop_lying_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_bcs",
                            "type": "csv",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "use_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_dims",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_dims",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_matrices_h5",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_clusters",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_b",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_b",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "exclude_genes",
                            "type": "csv",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "exclude_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_alpha",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_alpha",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_sigma",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_sigma",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_perplexity",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_perplexity",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "analysis",
                            "type": "path",
                            "valexp": "SUMMARIZE_ANALYSIS.analysis",
                            "mode": "reference",
                            "output": "analysis",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-udfa19490af/files/analysis",
                            "waiting": false
                        },
                        {
                            "id": "analysis_csv",
                            "type": "path",
                            "valexp": "SUMMARIZE_ANALYSIS.analysis_csv",
                            "mode": "reference",
                            "output": "analysis_csv",
                            "sweep": false,
                            "sweepRootId": "analysis_csv",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-udfa19490af/files/analysis_csv",
                            "waiting": false
                        },
                        {
                            "id": "cloupe_matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.cloupe_matrix_h5",
                            "mode": "reference",
                            "output": "cloupe_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "cloupe_matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-udfa1947bb0/files/cloupe_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "valexp": "SUMMARIZE_ANALYSIS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "summary",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-udfa19490af/files/summary.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "ANALYZER_PREFLIGHT",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "raw_matrices_h5",
                            "type": "h5",
                            "valexp": "self.raw_matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-udfa19442f4/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "num_analysis_bcs",
                            "type": "int",
                            "valexp": "self.num_analysis_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_analysis_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_a",
                            "type": "float",
                            "valexp": "self.neighbor_a",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_a",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_min_dist",
                            "type": "float",
                            "valexp": "self.umap_min_dist",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_min_dist",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pca_bcs",
                            "type": "int",
                            "valexp": "self.num_pca_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pca_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_input_pcs",
                            "type": "int",
                            "valexp": "self.tsne_input_pcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_input_pcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_max_dims",
                            "type": "int",
                            "valexp": "self.umap_max_dims",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_max_dims",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_principal_comps",
                            "type": "int",
                            "valexp": "self.num_principal_comps",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_principal_comps",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_knn",
                            "type": "int",
                            "valexp": "self.cbc_knn",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_knn",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "valexp": "self.max_clusters",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_clusters",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "graphclust_neighbors",
                            "type": "int",
                            "valexp": "self.graphclust_neighbors",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "graphclust_neighbors",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_iter",
                            "type": "int",
                            "valexp": "self.tsne_max_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_bcs",
                            "type": "csv",
                            "valexp": "self.use_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "use_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_alpha",
                            "type": "float",
                            "valexp": "self.cbc_alpha",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_alpha",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_realign_panorama",
                            "type": "bool",
                            "valexp": "self.cbc_realign_panorama",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_realign_panorama",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_n_neighbors",
                            "type": "int",
                            "valexp": "self.umap_n_neighbors",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_n_neighbors",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_genes",
                            "type": "csv",
                            "valexp": "self.use_genes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "use_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_mom_switch_iter",
                            "type": "int",
                            "valexp": "self.tsne_mom_switch_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_mom_switch_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_theta",
                            "type": "float",
                            "valexp": "self.tsne_theta",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_theta",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_sigma",
                            "type": "float",
                            "valexp": "self.cbc_sigma",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_sigma",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_metric",
                            "type": "string",
                            "valexp": "self.umap_metric",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_metric",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "exclude_genes",
                            "type": "csv",
                            "valexp": "self.exclude_genes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "exclude_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pca_genes",
                            "type": "int",
                            "valexp": "self.num_pca_genes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pca_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_perplexity",
                            "type": "int",
                            "valexp": "self.tsne_perplexity",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_perplexity",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_dims",
                            "type": "int",
                            "valexp": "self.tsne_max_dims",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_dims",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_stop_lying_iter",
                            "type": "int",
                            "valexp": "self.tsne_stop_lying_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_stop_lying_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_input_pcs",
                            "type": "int",
                            "valexp": "self.umap_input_pcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_input_pcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "self.no_secondary_analysis",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "no_secondary_analysis",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "filtered_matrices_h5",
                            "type": "h5",
                            "valexp": "self.filtered_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "neighbor_b",
                            "type": "float",
                            "valexp": "self.neighbor_b",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_b",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/analyzer/analyzer_preflight"
    },
    {
        "name": "CHOOSE_DIMENSION_REDUCTION",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "chemistry_batch_correction",
                            "type": "bool",
                            "valexp": "self.chemistry_batch_correction",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry_batch_correction",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/analyzer/choose_dimension_reduction"
    },
    {
        "name": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "pca_h5_list",
                            "type": "h5",
                            "valexp": "",
                            "mode": "array",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "pca_h5_list",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA/fork0/join-udfa1948a59/files/pca_h5.h5",
                                null
                            ],
                            "waiting": false
                        },
                        {
                            "id": "pca_csv_list",
                            "type": "path",
                            "valexp": "",
                            "mode": "array",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "pca_csv_list",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA/fork0/join-udfa1948a59/files/pca_csv",
                                null
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/analyzer/choose_dimension_reduction_output"
    },
    {
        "name": "COMBINE_CLUSTERING",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "kmeans_csv",
                            "type": "path",
                            "valexp": "RUN_KMEANS.kmeans_csv",
                            "mode": "reference",
                            "output": "kmeans_csv",
                            "sweep": false,
                            "sweepRootId": "kmeans_csv",
                            "node": "RUN_KMEANS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/join-udfa1948a9b/files/kmeans_csv",
                            "waiting": false
                        },
                        {
                            "id": "graphclust_h5",
                            "type": "h5",
                            "valexp": "MERGE_CLUSTERS.clusters_h5",
                            "mode": "reference",
                            "output": "clusters_h5",
                            "sweep": false,
                            "sweepRootId": "graphclust_h5",
                            "node": "MERGE_CLUSTERS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0/join-udfa1948b48/files/clusters_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "graphclust_csv",
                            "type": "path",
                            "valexp": "MERGE_CLUSTERS.clusters_csv",
                            "mode": "reference",
                            "output": "clusters_csv",
                            "sweep": false,
                            "sweepRootId": "graphclust_csv",
                            "node": "MERGE_CLUSTERS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0/join-udfa1948b48/files/clusters_csv",
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "kmeans_h5",
                            "type": "h5",
                            "valexp": "RUN_KMEANS.kmeans_h5",
                            "mode": "reference",
                            "output": "kmeans_h5",
                            "sweep": false,
                            "sweepRootId": "kmeans_h5",
                            "node": "RUN_KMEANS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/join-udfa1948a9b/files/kmeans_h5.h5",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/analyzer/combine_clustering"
    },
    {
        "name": "CORRECT_CHEMISTRY_BATCH",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH",
        "state": "disabled",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "dimred_matrix",
                            "type": "pickle",
                            "valexp": "RUN_FBPCA.dimred_matrix",
                            "mode": "reference",
                            "output": "dimred_matrix",
                            "sweep": false,
                            "sweepRootId": "dimred_matrix",
                            "node": "RUN_FBPCA",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrix_barcode_feature_info",
                            "type": "pickle",
                            "valexp": "RUN_FBPCA.matrix_barcode_feature_info",
                            "mode": "reference",
                            "output": "matrix_barcode_feature_info",
                            "sweep": false,
                            "sweepRootId": "matrix_barcode_feature_info",
                            "node": "RUN_FBPCA",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "self.aggr_library_info",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "aggr_library_info",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_knn",
                            "type": "int",
                            "valexp": "self.cbc_knn",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_knn",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_alpha",
                            "type": "float",
                            "valexp": "self.cbc_alpha",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_alpha",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_sigma",
                            "type": "float",
                            "valexp": "self.cbc_sigma",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_sigma",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_realign_panorama",
                            "type": "bool",
                            "valexp": "self.cbc_realign_panorama",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_realign_panorama",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/analyzer/correct_chemistry_batch"
    },
    {
        "name": "MERGE_CLUSTERS",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 6,
                    "__vmem_gb": 9
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "clusters_h5",
                            "type": "h5",
                            "valexp": "RUN_GRAPH_CLUSTERING.clusters_h5",
                            "mode": "reference",
                            "output": "clusters_h5",
                            "sweep": false,
                            "sweepRootId": "clusters_h5",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/join-udfa1948a9b/files/clusters_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-udfa1947bb0/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_h5",
                            "mode": "reference",
                            "output": "pca_h5",
                            "sweep": false,
                            "sweepRootId": "pca_h5",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-udfa1948a96/files/pca_h5.h5",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/analyzer/merge_clusters"
    },
    {
        "name": "PREPROCESS_MATRIX",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 3,
                    "__vmem_gb": 6
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "exclude_genes",
                            "type": "csv",
                            "valexp": "self.exclude_genes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "exclude_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "valexp": "self.num_analysis_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_analysis_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "self.filtered_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_genes",
                            "type": "csv",
                            "valexp": "self.use_genes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "use_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_bcs",
                            "type": "csv",
                            "valexp": "self.use_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "use_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/analyzer/preprocess_matrix"
    },
    {
        "name": "RUN_DIFFERENTIAL_EXPRESSION",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "graphclust"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "kmeans_10_clusters"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "kmeans_2_clusters"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "kmeans_3_clusters"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "kmeans_4_clusters"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "kmeans_5_clusters"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "kmeans_6_clusters"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "kmeans_7_clusters"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "kmeans_8_clusters"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "kmeans_9_clusters"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "valexp": "self.max_clusters",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_clusters",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-udfa1947bb0/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "clustering_h5",
                            "type": "h5",
                            "valexp": "COMBINE_CLUSTERING.clustering_h5",
                            "mode": "reference",
                            "output": "clustering_h5",
                            "sweep": false,
                            "sweepRootId": "clustering_h5",
                            "node": "COMBINE_CLUSTERING",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-udfa1948b73/files/clustering_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/analyzer/run_differential_expression"
    },
    {
        "name": "RUN_FBPCA",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_FBPCA",
        "state": "disabled",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_FBPCA",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_FBPCA/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_FBPCA/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_FBPCA/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-udfa1947bb0/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "self.aggr_library_info",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "aggr_library_info",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pcs",
                            "type": "int",
                            "valexp": "self.num_principal_comps",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_principal_comps",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/analyzer/run_fbpca"
    },
    {
        "name": "RUN_GRAPH_CLUSTERING",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 3,
                    "__vmem_gb": 6
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "k_nearest": 212,
                            "neighbor_index": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/split-udfa1948a9b/files/neighbor_index.pickle",
                            "row_start": 0,
                            "submatrix": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/split-udfa1948a9b/files/0_submatrix.h5",
                            "total_rows": 4846,
                            "use_bcs": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/split-udfa1948a9b/files/use_bcs.h5"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "neighbor_a",
                            "type": "float",
                            "valexp": "self.neighbor_a",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_a",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_b",
                            "type": "float",
                            "valexp": "self.neighbor_b",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_b",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "similarity_type",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "similarity_type",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": "nn",
                            "waiting": false
                        },
                        {
                            "id": "balltree_leaf_size",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "balltree_leaf_size",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-udfa1947bb0/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "num_neighbors",
                            "type": "int",
                            "valexp": "self.graphclust_neighbors",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "graphclust_neighbors",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_bcs",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_h5",
                            "mode": "reference",
                            "output": "pca_h5",
                            "sweep": false,
                            "sweepRootId": "pca_h5",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-udfa1948a96/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "input_pcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "input_pcs",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/analyzer/run_graph_clustering"
    },
    {
        "name": "RUN_KMEANS",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 2
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 3
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk1",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk2",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 5
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk3",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 6
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk4",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 7
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk5",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 8
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk6",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 9
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk7",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 10
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk8",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "valexp": "self.max_clusters",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_clusters",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_bcs",
                            "node": "RUN_KMEANS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pcs",
                            "node": "RUN_KMEANS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-udfa1947bb0/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_h5",
                            "mode": "reference",
                            "output": "pca_h5",
                            "sweep": false,
                            "sweepRootId": "pca_h5",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-udfa1948a96/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/analyzer/run_kmeans"
    },
    {
        "name": "RUN_MULTIGENOME_ANALYSIS",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "raw_matrices_h5",
                            "type": "h5",
                            "valexp": "self.raw_matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-udfa19442f4/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_matrices_h5",
                            "type": "h5",
                            "valexp": "self.filtered_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "is_multi_genome",
                            "type": "bool",
                            "valexp": "PREPROCESS_MATRIX.is_multi_genome",
                            "mode": "reference",
                            "output": "is_multi_genome",
                            "sweep": false,
                            "sweepRootId": "is_multi_genome",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/analyzer/run_multigenome_analysis"
    },
    {
        "name": "RUN_PCA",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "valexp": "self.num_pca_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pca_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_genes",
                            "type": "int",
                            "valexp": "self.num_pca_genes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pca_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pcs",
                            "type": "int",
                            "valexp": "self.num_principal_comps",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_principal_comps",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-udfa1947bb0/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/analyzer/run_pca"
    },
    {
        "name": "RUN_TSNE",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "feature_type": "Gene Expression",
                            "tsne_dims": 2
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "stop_lying_iter",
                            "type": "int",
                            "valexp": "self.tsne_stop_lying_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_stop_lying_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "mom_switch_iter",
                            "type": "int",
                            "valexp": "self.tsne_mom_switch_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_mom_switch_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_h5",
                            "mode": "reference",
                            "output": "pca_h5",
                            "sweep": false,
                            "sweepRootId": "pca_h5",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-udfa1948a96/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_dims",
                            "type": "int",
                            "valexp": "self.tsne_max_dims",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_dims",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_iter",
                            "type": "int",
                            "valexp": "self.tsne_max_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-udfa1947bb0/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "perplexity",
                            "type": "int",
                            "valexp": "self.tsne_perplexity",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_perplexity",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "input_pcs",
                            "type": "int",
                            "valexp": "self.tsne_input_pcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_input_pcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "theta",
                            "type": "float",
                            "valexp": "self.tsne_theta",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_theta",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/analyzer/run_tsne"
    },
    {
        "name": "RUN_UMAP",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "feature_type": "Gene Expression",
                            "umap_dims": 2
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_h5",
                            "mode": "reference",
                            "output": "pca_h5",
                            "sweep": false,
                            "sweepRootId": "pca_h5",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-udfa1948a96/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "n_neighbors",
                            "type": "int",
                            "valexp": "self.umap_n_neighbors",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_n_neighbors",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_dims",
                            "type": "int",
                            "valexp": "self.umap_max_dims",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_max_dims",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "min_dist",
                            "type": "float",
                            "valexp": "self.umap_min_dist",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_min_dist",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-udfa1947bb0/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "input_pcs",
                            "type": "int",
                            "valexp": "self.umap_input_pcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_input_pcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "metric",
                            "type": "string",
                            "valexp": "self.umap_metric",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_metric",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/analyzer/run_umap"
    },
    {
        "name": "SUMMARIZE_ANALYSIS",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "umap_csv",
                            "type": "path",
                            "valexp": "RUN_UMAP.umap_csv",
                            "mode": "reference",
                            "output": "umap_csv",
                            "sweep": false,
                            "sweepRootId": "umap_csv",
                            "node": "RUN_UMAP",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP/fork0/join-udfa1948a9b/files/umap_csv",
                            "waiting": false
                        },
                        {
                            "id": "is_multi_genome",
                            "type": "bool",
                            "valexp": "PREPROCESS_MATRIX.is_multi_genome",
                            "mode": "reference",
                            "output": "is_multi_genome",
                            "sweep": false,
                            "sweepRootId": "is_multi_genome",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_h5",
                            "mode": "reference",
                            "output": "pca_h5",
                            "sweep": false,
                            "sweepRootId": "pca_h5",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-udfa1948a96/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "diffexp_h5",
                            "type": "h5",
                            "valexp": "RUN_DIFFERENTIAL_EXPRESSION.diffexp_h5",
                            "mode": "reference",
                            "output": "diffexp_h5",
                            "sweep": false,
                            "sweepRootId": "diffexp_h5",
                            "node": "RUN_DIFFERENTIAL_EXPRESSION",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/join-udfa1948b79/files/diffexp_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "tsne_h5",
                            "type": "h5",
                            "valexp": "RUN_TSNE.tsne_h5",
                            "mode": "reference",
                            "output": "tsne_h5",
                            "sweep": false,
                            "sweepRootId": "tsne_h5",
                            "node": "RUN_TSNE",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE/fork0/join-udfa1948a9b/files/tsne_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "umap_h5",
                            "type": "h5",
                            "valexp": "RUN_UMAP.umap_h5",
                            "mode": "reference",
                            "output": "umap_h5",
                            "sweep": false,
                            "sweepRootId": "umap_h5",
                            "node": "RUN_UMAP",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP/fork0/join-udfa1948a9b/files/umap_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "clustering_csv",
                            "type": "path",
                            "valexp": "COMBINE_CLUSTERING.clustering_csv",
                            "mode": "reference",
                            "output": "clustering_csv",
                            "sweep": false,
                            "sweepRootId": "clustering_csv",
                            "node": "COMBINE_CLUSTERING",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-udfa1948b73/files/clustering_csv",
                            "waiting": false
                        },
                        {
                            "id": "tsne_csv",
                            "type": "path",
                            "valexp": "RUN_TSNE.tsne_csv",
                            "mode": "reference",
                            "output": "tsne_csv",
                            "sweep": false,
                            "sweepRootId": "tsne_csv",
                            "node": "RUN_TSNE",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE/fork0/join-udfa1948a9b/files/tsne_csv",
                            "waiting": false
                        },
                        {
                            "id": "batch_score_before_correction",
                            "type": "float",
                            "valexp": "CORRECT_CHEMISTRY_BATCH.batch_score_before_correction",
                            "mode": "reference",
                            "output": "batch_score_before_correction",
                            "sweep": false,
                            "sweepRootId": "batch_score_before_correction",
                            "node": "CORRECT_CHEMISTRY_BATCH",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "batch_score_after_correction",
                            "type": "float",
                            "valexp": "CORRECT_CHEMISTRY_BATCH.batch_score_after_correction",
                            "mode": "reference",
                            "output": "batch_score_after_correction",
                            "sweep": false,
                            "sweepRootId": "batch_score_after_correction",
                            "node": "CORRECT_CHEMISTRY_BATCH",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-udfa1947bb0/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "clustering_h5",
                            "type": "h5",
                            "valexp": "COMBINE_CLUSTERING.clustering_h5",
                            "mode": "reference",
                            "output": "clustering_h5",
                            "sweep": false,
                            "sweepRootId": "clustering_h5",
                            "node": "COMBINE_CLUSTERING",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-udfa1948b73/files/clustering_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "multi_genome_summary",
                            "type": "json",
                            "valexp": "RUN_MULTIGENOME_ANALYSIS.multi_genome_summary",
                            "mode": "reference",
                            "output": "multi_genome_summary",
                            "sweep": false,
                            "sweepRootId": "multi_genome_summary",
                            "node": "RUN_MULTIGENOME_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0/join-udfa1948a59/files/multi_genome_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "multi_genome_csv",
                            "type": "path",
                            "valexp": "RUN_MULTIGENOME_ANALYSIS.multi_genome_csv",
                            "mode": "reference",
                            "output": "multi_genome_csv",
                            "sweep": false,
                            "sweepRootId": "multi_genome_csv",
                            "node": "RUN_MULTIGENOME_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0/join-udfa1948a59/files/multi_genome_csv",
                            "waiting": false
                        },
                        {
                            "id": "multi_genome_json",
                            "type": "path",
                            "valexp": "RUN_MULTIGENOME_ANALYSIS.multi_genome_json",
                            "mode": "reference",
                            "output": "multi_genome_json",
                            "sweep": false,
                            "sweepRootId": "multi_genome_json",
                            "node": "RUN_MULTIGENOME_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0/join-udfa1948a59/files/multi_genome_json",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_batch_correction",
                            "type": "bool",
                            "valexp": "self.chemistry_batch_correction",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry_batch_correction",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "pca_csv",
                            "type": "path",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_csv",
                            "mode": "reference",
                            "output": "pca_csv",
                            "sweep": false,
                            "sweepRootId": "pca_csv",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-udfa1948a96/files/pca_csv",
                            "waiting": false
                        },
                        {
                            "id": "diffexp_csv",
                            "type": "path",
                            "valexp": "RUN_DIFFERENTIAL_EXPRESSION.diffexp_csv",
                            "mode": "reference",
                            "output": "diffexp_csv",
                            "sweep": false,
                            "sweepRootId": "diffexp_csv",
                            "node": "RUN_DIFFERENTIAL_EXPRESSION",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/join-udfa1948b79/files/diffexp_csv",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/analyzer/summarize_analysis"
    },
    {
        "name": "SETUP_CHUNKS",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SETUP_CHUNKS",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SETUP_CHUNKS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SETUP_CHUNKS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SETUP_CHUNKS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SETUP_CHUNKS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SETUP_CHUNKS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "library_type_filter",
                            "type": "string",
                            "valexp": "self.library_type_filter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "library_type_filter",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name",
                            "type": "string",
                            "valexp": "CHEMISTRY_DETECTOR.chemistry_type",
                            "mode": "reference",
                            "output": "chemistry_type",
                            "sweep": false,
                            "sweepRootId": "chemistry_name",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": "SC3Pv3",
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "map",
                            "valexp": "self.custom_chemistry_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "custom_chemistry_def",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "default_library_type",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "default_library_type",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "tdtomato_run2",
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "Tdtomato"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt"
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/common/setup_chunks"
    },
    {
        "name": "SUMMARIZE_REPORTS",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "_BASIC_SC_RNA_COUNTER.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "summaries",
                            "type": "json",
                            "valexp": "",
                            "mode": "array",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "summaries",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/join-udfa19493b2/files/summary.json",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-udfa19490af/files/summary.json",
                                null
                            ],
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "valexp": "self.sample_desc",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_desc",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/refdata-cellranger-mm10-3.0.0",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "path",
                            "valexp": "SC_RNA_ANALYZER.analysis",
                            "mode": "reference",
                            "output": "analysis",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-udfa19490af/files/analysis",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "SETUP_CHUNKS.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "tdtomato_run2",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary_h5",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.barcode_summary",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_summary_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-udfa19442f4/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_h5.h5",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/counter/summarize_reports"
    },
    {
        "name": "_BASIC_SC_RNA_COUNTER",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
        "type": "pipeline",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "cell_barcodes",
                            "type": "json",
                            "valexp": "self.cell_barcodes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cell_barcodes",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "correct_barcodes",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "correct_barcodes",
                            "node": "_BASIC_SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "skip_translate",
                            "type": "map",
                            "valexp": "CHECK_BARCODES_COMPATIBILITY.skip_translate",
                            "mode": "reference",
                            "output": "skip_translate",
                            "sweep": false,
                            "sweepRootId": "skip_translate",
                            "node": "CHECK_BARCODES_COMPATIBILITY",
                            "matchedFork": 0,
                            "value": {},
                            "waiting": false
                        },
                        {
                            "id": "filter_umis",
                            "type": "bool",
                            "valexp": "self.filter_umis",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "filter_umis",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.library_info",
                            "mode": "reference",
                            "output": "library_info",
                            "sweep": false,
                            "sweepRootId": "library_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_id": "0",
                                    "library_type": "Gene Expression"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "SETUP_CHUNKS.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "umi_min_qual_threshold",
                            "type": "int",
                            "valexp": "self.umi_min_qual_threshold",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umi_min_qual_threshold",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 10,
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "tdtomato_run2",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "CHEMISTRY_DETECTOR.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "self.recovered_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": 10000,
                            "waiting": false
                        },
                        {
                            "id": "retain_fastqs",
                            "type": "bool",
                            "valexp": "self.retain_fastqs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "retain_fastqs",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "align_threads",
                            "type": "int",
                            "valexp": "self.align_threads",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "align_threads",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 4,
                            "waiting": false
                        },
                        {
                            "id": "primers",
                            "type": "map",
                            "valexp": "self.primers",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "primers",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "name": "P5",
                                    "seq": "AATGATACGGCGACCACCGAGATCT"
                                },
                                {
                                    "name": "P7",
                                    "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                },
                                {
                                    "name": "R1",
                                    "seq": "ACACTCTTTCCCTACACGACG"
                                },
                                {
                                    "name": "R2",
                                    "seq": "GTGACTGGAGTTCAGACGTGTG"
                                },
                                {
                                    "name": "switch_oligo",
                                    "seq": "AAGCAGTGGTATCAACGCAGAGTACATGGG"
                                },
                                {
                                    "name": "polyA",
                                    "seq": "AAAAAAAAAAAAAAAAAAAA"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "self.align",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "initial_reads",
                            "type": "int",
                            "valexp": "self.initial_reads",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "initial_reads",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/refdata-cellranger-mm10-3.0.0",
                            "waiting": false
                        },
                        {
                            "id": "annotation_params",
                            "type": "map",
                            "valexp": "self.annotation_params",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "annotation_params",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chunks",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.chunks",
                            "mode": "reference",
                            "output": "chunks",
                            "sweep": false,
                            "sweepRootId": "chunks",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": null,
                                        "I2": null,
                                        "R1": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt/Tdtomato_S2_L001_R1_001.fastq.gz",
                                        "R2": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt/Tdtomato_S2_L001_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "barcode_confidence_threshold",
                            "type": "float",
                            "valexp": "self.barcode_confidence_threshold",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_confidence_threshold",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 0.975,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "rescue_multimappers",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "rescue_multimappers",
                            "node": "_BASIC_SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "skip_metrics",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "skip_metrics",
                            "node": "_BASIC_SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "valexp": "self.subsample_rate",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "subsample_rate",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 1,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "possorted_genome_bam_index",
                            "type": "bam.bai",
                            "valexp": "SORT_BY_POS.index",
                            "mode": "reference",
                            "output": "index",
                            "sweep": false,
                            "sweepRootId": "possorted_genome_bam_index",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join-udfa19442f4/files/output.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "FILTER_BARCODES.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "h5",
                            "valexp": "COUNT_GENES.barcode_summary",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_summary",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-udfa19442f4/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "raw_gene_bc_matrices_mex",
                            "type": "path",
                            "valexp": "COUNT_GENES.matrices_mex",
                            "mode": "reference",
                            "output": "matrices_mex",
                            "sweep": false,
                            "sweepRootId": "raw_gene_bc_matrices_mex",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-udfa19442f4/files/matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "SUMMARIZE_READ_REPORTS.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "FILTER_BARCODES.filtered_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "SUMMARIZE_READ_REPORTS.align",
                            "mode": "reference",
                            "output": "align",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": 255
                            },
                            "waiting": false
                        },
                        {
                            "id": "read1s",
                            "type": "fastq",
                            "valexp": "SUMMARIZE_READ_REPORTS.read1s",
                            "mode": "reference",
                            "output": "read1s",
                            "sweep": false,
                            "sweepRootId": "read1s",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk00-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk01-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk02-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk03-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk04-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk05-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk06-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk07-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk08-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk09-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk10-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk11-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk12-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk13-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk14-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk15-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk16-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk17-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk18-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk19-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk20-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk21-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk22-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk23-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk24-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk25-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk26-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk27-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk28-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk29-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk30-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk31-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk32-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk33-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk34-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk35-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk36-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk37-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk38-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk39-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk40-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk41-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk42-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk43-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk44-udfa193a143/files/read1s.fastq",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk45-udfa193a143/files/read1s.fastq"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_mex",
                            "type": "path",
                            "valexp": "FILTER_BARCODES.filtered_matrices_mex",
                            "mode": "reference",
                            "output": "filtered_matrices_mex",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_mex",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "barcode_correction_csv",
                            "type": "csv",
                            "valexp": "MARK_DUPLICATES.barcode_summary",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_correction_csv",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/join-udfa19437e1/files/barcode_summary.csv",
                            "waiting": false
                        },
                        {
                            "id": "possorted_genome_bam",
                            "type": "bam",
                            "valexp": "SORT_BY_POS.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "possorted_genome_bam",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join-udfa19442f4/files/output.bam",
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "valexp": "SUMMARIZE_BASIC_REPORTS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "summary",
                            "node": "SUMMARIZE_BASIC_REPORTS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/join-udfa19493b2/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "valexp": "REPORT_MOLECULES.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "molecule_info",
                            "node": "REPORT_MOLECULES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join-udfa1947ba6/files/output.h5",
                            "waiting": false
                        },
                        {
                            "id": "raw_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "COUNT_GENES.matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_gene_bc_matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-udfa19442f4/files/matrices_h5.h5",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "ALIGN_READS",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk00-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk01-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk02-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk03-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk04-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk05-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk06-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk07-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk08-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk09-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk10-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk11-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk12-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk13-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk14-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk15-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk16-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk17-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk18-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk19-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk20-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk21-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk22-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk23-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk24-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk25-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk26-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk27-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk28-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk29-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk30-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk31-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk32-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk33-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk34-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk35-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk36-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk37-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk38-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk39-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk40-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk41-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk42-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk43-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk44-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk45-udfa1937459/files/reads.fastq/1.fastq.lz4",
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "read2s",
                            "type": "fastq",
                            "valexp": "EXTRACT_READS.read2s",
                            "mode": "reference",
                            "output": "read2s",
                            "sweep": false,
                            "sweepRootId": "read2s",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [],
                            "waiting": false
                        },
                        {
                            "id": "read_groups",
                            "type": "string",
                            "valexp": "SUMMARIZE_READ_REPORTS.read_groups",
                            "mode": "reference",
                            "output": "read_groups",
                            "sweep": false,
                            "sweepRootId": "read_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "library_types",
                            "type": "string",
                            "valexp": "SUMMARIZE_READ_REPORTS.library_types",
                            "mode": "reference",
                            "output": "library_types",
                            "sweep": false,
                            "sweepRootId": "library_types",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/refdata-cellranger-mm10-3.0.0",
                            "waiting": false
                        },
                        {
                            "id": "threads",
                            "type": "int",
                            "valexp": "self.align_threads",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "align_threads",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 4,
                            "waiting": false
                        },
                        {
                            "id": "max_hits_per_read",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_hits_per_read",
                            "node": "ALIGN_READS",
                            "matchedFork": 0,
                            "value": -1,
                            "waiting": false
                        },
                        {
                            "id": "reads",
                            "type": "fastq",
                            "valexp": "EXTRACT_READS.reads",
                            "mode": "reference",
                            "output": "reads",
                            "sweep": false,
                            "sweepRootId": "reads",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk00-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk01-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk02-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk03-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk04-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk05-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk06-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk07-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk08-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk09-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk10-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk11-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk12-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk13-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk14-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk15-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk16-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk17-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk18-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk19-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk20-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk21-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk22-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk23-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk24-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk25-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk26-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk27-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk28-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk29-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk30-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk31-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk32-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk33-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk34-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk35-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk36-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk37-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk38-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk39-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk40-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk41-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk42-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk43-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk44-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk45-udfa1937459/files/reads.fastq/1.fastq.lz4"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/counter/align_reads"
    },
    {
        "name": "ATTACH_BCS_AND_UMIS",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 12,
                    "__vmem_gb": 15
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk00-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk00-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk01-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk01-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk02-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk02-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk03-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk03-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk04-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk04-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk05-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk05-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk06-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk06-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk07-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk07-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk08-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk08-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk09-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk09-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk10-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk10-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk11-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk11-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk12-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk12-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk13-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk13-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk14-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk14-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk15-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk15-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk16-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk16-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk17-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk17-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk18-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk18-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk19-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk19-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk20-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk20-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk21-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk21-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk22-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk22-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk23-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk23-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk24-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk24-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk25-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk25-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk26-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk26-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk27-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk27-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk28-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk28-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk29-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk29-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk30-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk30-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk31-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk31-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk32-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk32-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk33-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk33-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk34-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk34-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk35-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk35-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk36-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk36-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk37-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk37-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk38-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk38-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk39-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk39-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk40-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk40-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk41-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk41-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk42-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk42-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk43-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk43-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk44-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk44-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/bam_comments.json",
                            "chunk_genome_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk45-udfa193a1a7/files/genome_output.bam",
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk45-udfa193a143/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-udfa193d804/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/refdata-cellranger-mm10-3.0.0",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "self.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcode_counts",
                            "type": "json",
                            "valexp": "SUMMARIZE_READ_REPORTS.barcode_counts",
                            "mode": "reference",
                            "output": "barcode_counts",
                            "sweep": false,
                            "sweepRootId": "barcode_counts",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/join-udfa193a13b/files/barcode_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "feature_counts",
                            "type": "json",
                            "valexp": "SUMMARIZE_READ_REPORTS.feature_counts",
                            "mode": "reference",
                            "output": "feature_counts",
                            "sweep": false,
                            "sweepRootId": "feature_counts",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/join-udfa193a13b/files/feature_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "bam_comments",
                            "type": "string",
                            "valexp": "SUMMARIZE_READ_REPORTS.bam_comments",
                            "mode": "reference",
                            "output": "bam_comments",
                            "sweep": false,
                            "sweepRootId": "bam_comments",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "10x_bam_to_fastq:I1(BC:QT)",
                                "10x_bam_to_fastq:R1(CR:CY,UR:UY)",
                                "10x_bam_to_fastq:R2(SEQ:QUAL)"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "SUMMARIZE_READ_REPORTS.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "library_types",
                            "type": "string",
                            "valexp": "SUMMARIZE_READ_REPORTS.library_types",
                            "mode": "reference",
                            "output": "library_types",
                            "sweep": false,
                            "sweepRootId": "library_types",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "barcode_confidence_threshold",
                            "type": "float",
                            "valexp": "self.barcode_confidence_threshold",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_confidence_threshold",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 0.975,
                            "waiting": false
                        },
                        {
                            "id": "rescue_multimappers",
                            "type": "bool",
                            "valexp": "self.rescue_multimappers",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "rescue_multimappers",
                            "node": "_BASIC_SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "skip_translate",
                            "type": "map",
                            "valexp": "self.skip_translate",
                            "mode": "reference",
                            "output": "skip_translate",
                            "sweep": false,
                            "sweepRootId": "skip_translate",
                            "node": "CHECK_BARCODES_COMPATIBILITY",
                            "matchedFork": 0,
                            "value": {},
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "self.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "library_ids",
                            "type": "string",
                            "valexp": "SUMMARIZE_READ_REPORTS.library_ids",
                            "mode": "reference",
                            "output": "library_ids",
                            "sweep": false,
                            "sweepRootId": "library_ids",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "annotation_params",
                            "type": "map",
                            "valexp": "self.annotation_params",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "annotation_params",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "correct_barcodes",
                            "type": "bool",
                            "valexp": "self.correct_barcodes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "correct_barcodes",
                            "node": "_BASIC_SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "genome_inputs",
                            "type": "bam",
                            "valexp": "ALIGN_READS.genome_output",
                            "mode": "reference",
                            "output": "genome_output",
                            "sweep": false,
                            "sweepRootId": "genome_inputs",
                            "node": "ALIGN_READS",
                            "matchedFork": 0,
                            "value": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk00-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk01-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk02-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk03-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk04-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk05-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk06-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk07-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk08-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk09-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk10-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk11-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk12-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk13-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk14-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk15-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk16-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk17-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk18-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk19-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk20-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk21-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk22-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk23-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk24-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk25-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk26-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk27-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk28-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk29-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk30-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk31-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk32-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk33-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk34-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk35-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk36-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk37-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk38-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk39-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk40-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk41-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk42-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk43-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk44-udfa193a1a7/files/genome_output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk45-udfa193a1a7/files/genome_output.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "tags",
                            "type": "fastq",
                            "valexp": "SUMMARIZE_READ_REPORTS.tags",
                            "mode": "reference",
                            "output": "tags",
                            "sweep": false,
                            "sweepRootId": "tags",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk00-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk01-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk02-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk03-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk04-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk05-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk06-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk07-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk08-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk09-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk10-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk11-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk12-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk13-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk14-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk15-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk16-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk17-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk18-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk19-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk20-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk21-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk22-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk23-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk24-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk25-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk26-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk27-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk28-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk29-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk30-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk31-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk32-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk33-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk34-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk35-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk36-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk37-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk38-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk39-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk40-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk41-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk42-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk43-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk44-udfa193a143/files/tags.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk45-udfa193a143/files/tags.fastq.lz4"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "umi_min_qual_threshold",
                            "type": "int",
                            "valexp": "self.umi_min_qual_threshold",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umi_min_qual_threshold",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 10,
                            "waiting": false
                        },
                        {
                            "id": "skip_metrics",
                            "type": "bool",
                            "valexp": "self.skip_metrics",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "skip_metrics",
                            "node": "_BASIC_SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "self.library_info",
                            "mode": "reference",
                            "output": "library_info",
                            "sweep": false,
                            "sweepRootId": "library_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_id": "0",
                                    "library_type": "Gene Expression"
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/counter/attach_bcs_and_umis"
    },
    {
        "name": "BUCKET_BY_BC",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk00-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk01-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk02-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk03-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk04-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk05-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk06-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk07-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk08-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk09-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk10-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk11-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk12-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk13-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk14-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk15-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk16-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk17-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk18-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk19-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk20-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk21-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk22-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk23-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk24-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk25-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk26-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk27-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk28-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk29-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk30-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk31-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk32-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk33-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk34-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk35-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk36-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk37-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk38-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk39-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk40-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk41-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk42-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk43-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk44-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 2,
                            "__vmem_gb": 7,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk45-udfa193d80a/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "LB": "0.1",
                                    "ID": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "PL": "ILLUMINA",
                                    "SM": "tdtomato_run2"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "nbases",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "nbases",
                            "node": "BUCKET_BY_BC",
                            "matchedFork": 0,
                            "value": 2,
                            "waiting": false
                        },
                        {
                            "id": "inputs",
                            "type": "bam",
                            "valexp": "ATTACH_BCS_AND_UMIS.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "inputs",
                            "node": "ATTACH_BCS_AND_UMIS",
                            "matchedFork": 0,
                            "value": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk00-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk01-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk02-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk03-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk04-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk05-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk06-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk07-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk08-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk09-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk10-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk11-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk12-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk13-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk14-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk15-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk16-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk17-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk18-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk19-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk20-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk21-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk22-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk23-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk24-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk25-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk26-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk27-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk28-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk29-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk30-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk31-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk32-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk33-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk34-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk35-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk36-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk37-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk38-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk39-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk40-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk41-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk42-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk43-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk44-udfa193d80a/files/output.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk45-udfa193d80a/files/output.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "num_alignments",
                            "type": "int",
                            "valexp": "ATTACH_BCS_AND_UMIS.num_alignments",
                            "mode": "reference",
                            "output": "num_alignments",
                            "sweep": false,
                            "sweepRootId": "num_alignments",
                            "node": "ATTACH_BCS_AND_UMIS",
                            "matchedFork": 0,
                            "value": [
                                6042233,
                                6048809,
                                6045638,
                                6044095,
                                6045325,
                                6045278,
                                6048235,
                                6044756,
                                6048980,
                                6046570,
                                6045555,
                                6048552,
                                6048064,
                                6047313,
                                6042912,
                                6045290,
                                6048696,
                                6049035,
                                6045499,
                                6047537,
                                6047545,
                                6047856,
                                6047015,
                                6046672,
                                6047896,
                                6044913,
                                6045906,
                                6047078,
                                6046542,
                                6046949,
                                6049504,
                                6047552,
                                6050069,
                                6050544,
                                6046111,
                                6046364,
                                6045756,
                                6045520,
                                6048209,
                                6052014,
                                6047361,
                                6046761,
                                6044386,
                                6048913,
                                6050139,
                                2292890
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/counter/bucket_reads_by_bc"
    },
    {
        "name": "CHUNK_READS",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 4,
                            "__vmem_gb": 4,
                            "read_chunk": {
                                "gem_group": 1,
                                "library_type": "Gene Expression",
                                "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "subsample_rate": 1.0,
                                "library_id": "0",
                                "read_chunks": {
                                    "I1": null,
                                    "I2": null,
                                    "R1": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt/Tdtomato_S2_L001_R1_001.fastq.gz",
                                    "R2": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt/Tdtomato_S2_L001_R2_001.fastq.gz"
                                },
                                "chemistry": {
                                    "si_read_offset": 0,
                                    "strandedness": "+",
                                    "umi_read_offset": 16,
                                    "barcode_read_type": "R1",
                                    "umi_read_type": "R1",
                                    "barcode_read_length": 16,
                                    "rna_read_type": "R2",
                                    "barcode_whitelist": "3M-february-2018",
                                    "si_read_type": "I1",
                                    "rna_read_length": null,
                                    "description": "Single Cell 3' v3",
                                    "rna_read_offset": 0,
                                    "barcode_read_offset": 0,
                                    "rna_read2_type": null,
                                    "endedness": "three_prime",
                                    "name": "SC3Pv3",
                                    "umi_read_length": 12,
                                    "si_read_length": null,
                                    "read_type_to_bcl2fastq_filename": {
                                        "I1": "I1",
                                        "I2": null,
                                        "R1": "R1",
                                        "R2": "R2"
                                    },
                                    "rna_read2_length": null,
                                    "rna_read2_offset": 0,
                                    "read_type_to_bcl_processor_filename": {
                                        "I1": "I1",
                                        "I2": "I2",
                                        "R1": "RA",
                                        "R2": null
                                    }
                                },
                                "reads_interleaved": false
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "chunks",
                            "type": "map",
                            "valexp": "self.chunks",
                            "mode": "reference",
                            "output": "chunks",
                            "sweep": false,
                            "sweepRootId": "chunks",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": null,
                                        "I2": null,
                                        "R1": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt/Tdtomato_S2_L001_R1_001.fastq.gz",
                                        "R2": "/orange/ewang/lancetdenes/190979853/fastq_files/tdt/Tdtomato_S2_L001_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reads_per_file",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reads_per_file",
                            "node": "CHUNK_READS",
                            "matchedFork": 0,
                            "value": 5000000,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/common/chunk_reads"
    },
    {
        "name": "COUNT_GENES",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 12,
                    "__vmem_gb": 15
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk47-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk48-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk49-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk50-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk51-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/refdata-cellranger-mm10-3.0.0",
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "SUMMARIZE_READ_REPORTS.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "SUMMARIZE_READ_REPORTS.align",
                            "mode": "reference",
                            "output": "align",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": 255
                            },
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "self.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "tdtomato_run2",
                            "waiting": false
                        },
                        {
                            "id": "inputs",
                            "type": "bam",
                            "valexp": "MARK_DUPLICATES.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "inputs",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk47-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk48-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk49-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk50-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk51-udfa194382b/files/alignments.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "self.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "barcodes_detected",
                            "type": "csv",
                            "valexp": "ATTACH_BCS_AND_UMIS.barcodes_detected",
                            "mode": "reference",
                            "output": "barcodes_detected",
                            "sweep": false,
                            "sweepRootId": "barcodes_detected",
                            "node": "ATTACH_BCS_AND_UMIS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/join-udfa193d804/files/barcodes_detected.csv",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/counter/count_genes"
    },
    {
        "name": "EXTRACT_READS",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 8,
                    "__vmem_gb": 11
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0000.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0000.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0001.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0001.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0002.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0002.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0003.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0003.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0004.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0004.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0005.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0005.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0006.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0006.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0007.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0007.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0008.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0008.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0009.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0009.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0010.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0010.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0011.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0011.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0012.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0012.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0013.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0013.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0014.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0014.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0015.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0015.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0016.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0016.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0017.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0017.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0018.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0018.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0019.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0019.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0020.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0020.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0021.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0021.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0022.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0022.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0023.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0023.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0024.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0024.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0025.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0025.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0026.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0026.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0027.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0027.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0028.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0028.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0029.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0029.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0030.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0030.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0031.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0031.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0032.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0032.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0033.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0033.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0034.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0034.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0035.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0035.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0036.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0036.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0037.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0037.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0038.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0038.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0039.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0039.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0040.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0040.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0041.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0041.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0042.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0042.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0043.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0043.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0044.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0044.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0045.fastq.lz4",
                                "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0045.fastq.lz4"
                            },
                            "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "initial_reads",
                            "type": "int",
                            "valexp": "self.initial_reads",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "initial_reads",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "self.align",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "self.library_info",
                            "mode": "reference",
                            "output": "library_info",
                            "sweep": false,
                            "sweepRootId": "library_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_id": "0",
                                    "library_type": "Gene Expression"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "valexp": "self.subsample_rate",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "subsample_rate",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip_metrics",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "skip_metrics",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/refdata-cellranger-mm10-3.0.0",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "self.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "reads_per_file",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reads_per_file",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": 5000000,
                            "waiting": false
                        },
                        {
                            "id": "primers",
                            "type": "map",
                            "valexp": "self.primers",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "primers",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "name": "P5",
                                    "seq": "AATGATACGGCGACCACCGAGATCT"
                                },
                                {
                                    "name": "P7",
                                    "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                },
                                {
                                    "name": "R1",
                                    "seq": "ACACTCTTTCCCTACACGACG"
                                },
                                {
                                    "name": "R2",
                                    "seq": "GTGACTGGAGTTCAGACGTGTG"
                                },
                                {
                                    "name": "switch_oligo",
                                    "seq": "AAGCAGTGGTATCAACGCAGAGTACATGGG"
                                },
                                {
                                    "name": "polyA",
                                    "seq": "AAAAAAAAAAAAAAAAAAAA"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "augment_fastq",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "augment_fastq",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "chunks",
                            "type": "map",
                            "valexp": "CHUNK_READS.out_chunks",
                            "mode": "reference",
                            "output": "out_chunks",
                            "sweep": false,
                            "sweepRootId": "chunks",
                            "node": "CHUNK_READS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0000.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0000.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0001.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0001.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0002.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0002.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0003.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0003.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0004.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0004.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0005.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0005.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0006.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0006.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0007.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0007.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0008.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0008.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0009.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0009.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0010.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0010.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0011.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0011.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0012.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0012.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0013.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0013.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0014.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0014.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0015.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0015.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0016.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0016.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0017.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0017.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0018.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0018.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0019.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0019.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0020.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0020.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0021.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0021.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0022.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0022.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0023.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0023.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0024.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0024.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0025.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0025.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0026.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0026.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0027.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0027.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0028.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0028.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0029.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0029.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0030.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0030.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0031.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0031.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0032.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0032.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0033.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0033.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0034.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0034.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0035.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0035.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0036.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0036.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0037.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0037.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0038.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0038.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0039.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0039.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0040.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0040.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0041.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0041.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0042.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0042.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0043.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0043.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0044.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0044.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "R1": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R1-0045.fastq.lz4",
                                        "R2": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-udfa19371c1/files/R2-0045.fastq.lz4"
                                    }
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/common/extract_reads"
    },
    {
        "name": "FILTER_BARCODES",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 16,
                    "__vmem_gb": 19
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "SUMMARIZE_READ_REPORTS.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "json",
                            "valexp": "self.cell_barcodes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cell_barcodes",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_correction_csv",
                            "type": "csv",
                            "valexp": "MARK_DUPLICATES.barcode_summary",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_correction_csv",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/join-udfa19437e1/files/barcode_summary.csv",
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "self.recovered_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": 10000,
                            "waiting": false
                        },
                        {
                            "id": "attach_bcs_summary",
                            "type": "json",
                            "valexp": "ATTACH_BCS_AND_UMIS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "attach_bcs_summary",
                            "node": "ATTACH_BCS_AND_UMIS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/join-udfa193d804/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "h5",
                            "valexp": "COUNT_GENES.barcode_summary",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_summary",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-udfa19442f4/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "self.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "tdtomato_run2",
                            "waiting": false
                        },
                        {
                            "id": "matrices_h5",
                            "type": "h5",
                            "valexp": "COUNT_GENES.matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-udfa19442f4/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/refdata-cellranger-mm10-3.0.0",
                            "waiting": false
                        },
                        {
                            "id": "raw_fastq_summary",
                            "type": "json",
                            "valexp": "SUMMARIZE_READ_REPORTS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "raw_fastq_summary",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/join-udfa193a13b/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "self.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/counter/filter_barcodes"
    },
    {
        "name": "MARK_DUPLICATES",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 34351837282304,
                            "chunk_size_gb": 4.970658819100606,
                            "chunk_start": 103874560,
                            "major_barcode_proportion": 1.0
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 67625687094993,
                            "chunk_size_gb": 4.814704906423457,
                            "chunk_start": 34351837282304,
                            "major_barcode_proportion": 0.08060453400503778
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 100573144772044,
                            "chunk_size_gb": 4.767481231581083,
                            "chunk_start": 67625687094993,
                            "major_barcode_proportion": 0.10263929618768329
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 132832671425064,
                            "chunk_size_gb": 4.667928908093166,
                            "chunk_start": 100573144772044,
                            "major_barcode_proportion": 0.05778648383937316
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 165408669936830,
                            "chunk_size_gb": 4.713714628795773,
                            "chunk_start": 132832671425064,
                            "major_barcode_proportion": 0.045816733067729085
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 197868383589618,
                            "chunk_size_gb": 4.69689484894292,
                            "chunk_start": 165408669936830,
                            "major_barcode_proportion": 0.04662698412698413
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 230356393327738,
                            "chunk_size_gb": 4.700994721906476,
                            "chunk_start": 197868383589618,
                            "major_barcode_proportion": 0.08259587020648967
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 262883417724557,
                            "chunk_size_gb": 4.706625769322227,
                            "chunk_start": 230356393327738,
                            "major_barcode_proportion": 0.0625
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 295175656901128,
                            "chunk_size_gb": 4.672660251470151,
                            "chunk_start": 262883417724557,
                            "major_barcode_proportion": 0.03125
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 328029242249332,
                            "chunk_size_gb": 4.753885082204693,
                            "chunk_start": 295175656901128,
                            "major_barcode_proportion": 0.06903353057199212
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 361423095719408,
                            "chunk_size_gb": 4.832074287823291,
                            "chunk_start": 328029242249332,
                            "major_barcode_proportion": 0.10495049504950495
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 392867704071125,
                            "chunk_size_gb": 4.549997768522181,
                            "chunk_start": 361423095719408,
                            "major_barcode_proportion": 0.06744868035190615
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 425983999430752,
                            "chunk_size_gb": 4.7919015205022415,
                            "chunk_start": 392867704071125,
                            "major_barcode_proportion": 0.033170731707317075
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 458076939206947,
                            "chunk_size_gb": 4.643841244040618,
                            "chunk_start": 425983999430752,
                            "major_barcode_proportion": 0.14131501472031405
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 490534741712852,
                            "chunk_size_gb": 4.696625003165691,
                            "chunk_start": 458076939206947,
                            "major_barcode_proportion": 0.06461232604373758
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 523322117239724,
                            "chunk_size_gb": 4.74431057849204,
                            "chunk_start": 490534741712852,
                            "major_barcode_proportion": 0.09270216962524655
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 555766115285313,
                            "chunk_size_gb": 4.69462868495924,
                            "chunk_start": 523322117239724,
                            "major_barcode_proportion": 0.06387225548902195
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 588043026470012,
                            "chunk_size_gb": 4.670446937618839,
                            "chunk_start": 555766115285313,
                            "major_barcode_proportion": 0.054835493519441676
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 620725790947580,
                            "chunk_size_gb": 4.729169835869753,
                            "chunk_start": 588043026470012,
                            "major_barcode_proportion": 0.05123152709359606
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 653137612790576,
                            "chunk_size_gb": 4.6899625199349835,
                            "chunk_start": 620725790947580,
                            "major_barcode_proportion": 0.02631578947368421
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 685708081742285,
                            "chunk_size_gb": 4.712913560003149,
                            "chunk_start": 653137612790576,
                            "major_barcode_proportion": 0.050595238095238096
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 718624967631461,
                            "chunk_size_gb": 4.7630457465262905,
                            "chunk_start": 685708081742285,
                            "major_barcode_proportion": 0.044642857142857144
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 751697434768186,
                            "chunk_size_gb": 4.785570581050052,
                            "chunk_start": 718624967631461,
                            "major_barcode_proportion": 0.05841584158415842
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 784145263733024,
                            "chunk_size_gb": 4.69517063352635,
                            "chunk_start": 751697434768186,
                            "major_barcode_proportion": 0.047619047619047616
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 817477880083887,
                            "chunk_size_gb": 4.823218405558779,
                            "chunk_start": 784145263733024,
                            "major_barcode_proportion": 0.036742800397219465
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 849121748698498,
                            "chunk_size_gb": 4.57883962109237,
                            "chunk_start": 817477880083887,
                            "major_barcode_proportion": 0.05952380952380952
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 881537961111734,
                            "chunk_size_gb": 4.690601766610488,
                            "chunk_start": 849121748698498,
                            "major_barcode_proportion": 0.03681592039800995
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 914365040908919,
                            "chunk_size_gb": 4.750058032757747,
                            "chunk_start": 881537961111734,
                            "major_barcode_proportion": 0.07107601184600197
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 946727080799025,
                            "chunk_size_gb": 4.68276310477453,
                            "chunk_start": 914365040908919,
                            "major_barcode_proportion": 0.04595404595404595
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 980049440821277,
                            "chunk_size_gb": 4.821730104863704,
                            "chunk_start": 946727080799025,
                            "major_barcode_proportion": 0.03766105054509415
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1011710445571487,
                            "chunk_size_gb": 4.581309788673299,
                            "chunk_start": 980049440821277,
                            "major_barcode_proportion": 0.08159203980099503
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1044476438141183,
                            "chunk_size_gb": 4.741219353102263,
                            "chunk_start": 1011710445571487,
                            "major_barcode_proportion": 0.05632411067193676
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1077590723075496,
                            "chunk_size_gb": 4.791610451219497,
                            "chunk_start": 1044476438141183,
                            "major_barcode_proportion": 0.06614017769002961
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1110234087912045,
                            "chunk_size_gb": 4.723477270634396,
                            "chunk_start": 1077590723075496,
                            "major_barcode_proportion": 0.0594541910331384
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1142466385149952,
                            "chunk_size_gb": 4.663984569854345,
                            "chunk_start": 1110234087912045,
                            "major_barcode_proportion": 0.04970178926441352
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1175302255983224,
                            "chunk_size_gb": 4.751323960807232,
                            "chunk_start": 1142466385149952,
                            "major_barcode_proportion": 0.06330365974282888
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1209540687065513,
                            "chunk_size_gb": 4.9542757048129715,
                            "chunk_start": 1175302255983224,
                            "major_barcode_proportion": 0.06653426017874876
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1240334070386308,
                            "chunk_size_gb": 4.4557727725165295,
                            "chunk_start": 1209540687065513,
                            "major_barcode_proportion": 0.05643564356435644
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1272599284213403,
                            "chunk_size_gb": 4.668747312260267,
                            "chunk_start": 1240334070386308,
                            "major_barcode_proportion": 0.056943056943056944
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1305096003695920,
                            "chunk_size_gb": 4.702246036273209,
                            "chunk_start": 1272599284213403,
                            "major_barcode_proportion": 0.034722222222222224
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1337924612528689,
                            "chunk_size_gb": 4.750294013861966,
                            "chunk_start": 1305096003695920,
                            "major_barcode_proportion": 0.04215686274509804
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1370146119441364,
                            "chunk_size_gb": 4.662437017835561,
                            "chunk_start": 1337924612528689,
                            "major_barcode_proportion": 0.0707876370887338
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1402232224775983,
                            "chunk_size_gb": 4.642822933038724,
                            "chunk_start": 1370146119441364,
                            "major_barcode_proportion": 0.064453125
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1435110675795436,
                            "chunk_size_gb": 4.757486695917453,
                            "chunk_start": 1402232224775983,
                            "major_barcode_proportion": 0.06752730883813307
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1467841355810588,
                            "chunk_size_gb": 4.736109372144978,
                            "chunk_start": 1435110675795436,
                            "major_barcode_proportion": 0.04039408866995074
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1500447929285377,
                            "chunk_size_gb": 4.718151574270516,
                            "chunk_start": 1467841355810588,
                            "major_barcode_proportion": 0.0611439842209073
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1532604528460319,
                            "chunk_size_gb": 4.6530389119897935,
                            "chunk_start": 1500447929285377,
                            "major_barcode_proportion": 0.038272816486751716
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1565768426602701,
                            "chunk_size_gb": 4.7987967605333814,
                            "chunk_start": 1532604528460319,
                            "major_barcode_proportion": 0.05660377358490566
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1597722945676597,
                            "chunk_size_gb": 4.623802300320371,
                            "chunk_start": 1565768426602701,
                            "major_barcode_proportion": 0.03823529411764706
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1630200327319457,
                            "chunk_size_gb": 4.6994451215064625,
                            "chunk_start": 1597722945676597,
                            "major_barcode_proportion": 0.05467196819085487
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": 1662444809266778,
                            "chunk_size_gb": 4.665760080150867,
                            "chunk_start": 1630200327319457,
                            "major_barcode_proportion": 0.06549364613880743
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_compression_ratio": 0.09820714681099699,
                            "chunk_end": null,
                            "chunk_size_gb": 0.00469661572855068,
                            "chunk_start": 1662444809266778,
                            "major_barcode_proportion": 0.17073170731707318
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/refdata-cellranger-mm10-3.0.0",
                            "waiting": false
                        },
                        {
                            "id": "filter_umis",
                            "type": "bool",
                            "valexp": "self.filter_umis",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "filter_umis",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "self.library_info",
                            "mode": "reference",
                            "output": "library_info",
                            "sweep": false,
                            "sweepRootId": "library_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_id": "0",
                                    "library_type": "Gene Expression"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "input",
                            "type": "bam",
                            "valexp": "SORT_BY_BC",
                            "mode": "reference",
                            "output": "default",
                            "sweep": false,
                            "sweepRootId": "input",
                            "node": "SORT_BY_BC",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/join-udfa19425b9/files/default.bam",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/lib/bin/cr_stage martian mark_duplicates"
    },
    {
        "name": "REPORT_MOLECULES",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 30,
                    "__vmem_gb": 33
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk47-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk48-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk49-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk50-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk51-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "self.recovered_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": 10000,
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "FILTER_BARCODES.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "inputs",
                            "type": "bam",
                            "valexp": "MARK_DUPLICATES.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "inputs",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk47-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk48-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk49-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk50-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk51-udfa194382b/files/alignments.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "SUMMARIZE_READ_REPORTS.align",
                            "mode": "reference",
                            "output": "align",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": 255
                            },
                            "waiting": false
                        },
                        {
                            "id": "extract_reads_summary",
                            "type": "json",
                            "valexp": "SUMMARIZE_READ_REPORTS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "extract_reads_summary",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/join-udfa193a13b/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "attach_bcs_and_umis_summary",
                            "type": "json",
                            "valexp": "ATTACH_BCS_AND_UMIS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "attach_bcs_and_umis_summary",
                            "node": "ATTACH_BCS_AND_UMIS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/join-udfa193d804/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/refdata-cellranger-mm10-3.0.0",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "mark_duplicates_summary",
                            "type": "json",
                            "valexp": "MARK_DUPLICATES.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "mark_duplicates_summary",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/join-udfa19437e1/files/summary.json",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/counter/report_molecules"
    },
    {
        "name": "SORT_BY_BC",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-CG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-CG-1.bam"
                            ],
                            "prefix": "CG-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-TG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-TG-1.bam"
                            ],
                            "prefix": "TG-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-CT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-CT-1.bam"
                            ],
                            "prefix": "CT-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-GG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-GG-1.bam"
                            ],
                            "prefix": "GG-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-TC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-TC-1.bam"
                            ],
                            "prefix": "TC-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-GA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-GA-1.bam"
                            ],
                            "prefix": "GA-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-CA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-CA-1.bam"
                            ],
                            "prefix": "CA-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-CC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-CC-1.bam"
                            ],
                            "prefix": "CC-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-AT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-AT-1.bam"
                            ],
                            "prefix": "AT-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-GT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-GT-1.bam"
                            ],
                            "prefix": "GT-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-AC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-AC-1.bam"
                            ],
                            "prefix": "AC-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-AA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-AA-1.bam"
                            ],
                            "prefix": "AA-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-AG-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-AG-1.bam"
                            ],
                            "prefix": "AG-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-GC-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-GC-1.bam"
                            ],
                            "prefix": "GC-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-TA-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-TA-1.bam"
                            ],
                            "prefix": "TA-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-TT-1.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-TT-1.bam"
                            ],
                            "prefix": "TT-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-.bam"
                            ],
                            "prefix": ""
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "buckets",
                            "type": "map",
                            "valexp": "BUCKET_BY_BC.buckets",
                            "mode": "reference",
                            "output": "buckets",
                            "sweep": false,
                            "sweepRootId": "buckets",
                            "node": "BUCKET_BY_BC",
                            "matchedFork": 0,
                            "value": {
                                "CG-1": [
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-CG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-CG-1.bam"
                                ],
                                "TG-1": [
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-TG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-TG-1.bam"
                                ],
                                "TA-1": [
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-TA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-TA-1.bam"
                                ],
                                "GG-1": [
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-GG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-GG-1.bam"
                                ],
                                "TC-1": [
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-TC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-TC-1.bam"
                                ],
                                "GA-1": [
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-GA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-GA-1.bam"
                                ],
                                "CA-1": [
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-CA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-CA-1.bam"
                                ],
                                "CC-1": [
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-CC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-CC-1.bam"
                                ],
                                "AT-1": [
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-AT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-AT-1.bam"
                                ],
                                "AC-1": [
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-AC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-AC-1.bam"
                                ],
                                "AA-1": [
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-AA-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-AA-1.bam"
                                ],
                                "AG-1": [
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-AG-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-AG-1.bam"
                                ],
                                "GC-1": [
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-GC-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-GC-1.bam"
                                ],
                                "CT-1": [
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-CT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-CT-1.bam"
                                ],
                                "": [
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-.bam"
                                ],
                                "TT-1": [
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-TT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-TT-1.bam"
                                ],
                                "GT-1": [
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-udfa19403f3/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-udfa19403f3/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-udfa19403f3/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-udfa19403f3/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-udfa19403f3/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-udfa19403f3/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-udfa19403f3/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-udfa19403f3/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-udfa19403f3/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-udfa19403f3/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-udfa19403f3/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-udfa19403f3/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-udfa19403f3/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-udfa19403f3/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-udfa19403f4/files/bc-GT-1.bam",
                                    "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-udfa19403f4/files/bc-GT-1.bam"
                                ]
                            },
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/counter/sort_reads_by_bc"
    },
    {
        "name": "SORT_BY_POS",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk47-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk48-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk49-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk50-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk51-udfa194382b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "inputs",
                            "type": "bam",
                            "valexp": "MARK_DUPLICATES.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "inputs",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk47-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk48-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk49-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk50-udfa194382b/files/alignments.bam",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk51-udfa194382b/files/alignments.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "num_threads",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_threads",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": 6,
                            "waiting": false
                        },
                        {
                            "id": "mem_gb",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "mem_gb",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": 2,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/counter/sort_reads_by_pos"
    },
    {
        "name": "SUBSAMPLE_READS",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 6,
                    "__vmem_gb": 9
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "chunk_len": 40000069,
                            "chunk_start": 0,
                            "subsample_info": [
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 4682,
                                    "library_subsample_rates": [
                                        0.09999704799218119
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 5000,
                                    "library_subsample_rates": [
                                        0.1067888167366309
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 9364,
                                    "library_subsample_rates": [
                                        0.19999409598436238
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 14046,
                                    "library_subsample_rates": [
                                        0.2999911439765436
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 18729,
                                    "library_subsample_rates": [
                                        0.40000954973207203
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 20000,
                                    "library_subsample_rates": [
                                        0.4271552669465236
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 23411,
                                    "library_subsample_rates": [
                                        0.5000065977242533
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 28093,
                                    "library_subsample_rates": [
                                        0.6000036457164344
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 32775,
                                    "library_subsample_rates": [
                                        0.7000006937086155
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 37457,
                                    "library_subsample_rates": [
                                        0.7999977417007967
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 42139,
                                    "library_subsample_rates": [
                                        0.8999947896929779
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 46821,
                                    "library_subsample_rates": [
                                        1.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 4682,
                                    "library_subsample_rates": [
                                        0.16817868302579034
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 5000,
                                    "library_subsample_rates": [
                                        0.17960132745171972
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 9364,
                                    "library_subsample_rates": [
                                        0.3363573660515807
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 14046,
                                    "library_subsample_rates": [
                                        0.504536049077371
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 18729,
                                    "library_subsample_rates": [
                                        0.6727506523686517
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 20000,
                                    "library_subsample_rates": [
                                        0.7184053098068789
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 23411,
                                    "library_subsample_rates": [
                                        0.840929335394442
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 28093,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 32775,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 37457,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 42139,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 46821,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_len": 10693649,
                            "chunk_start": 40000069,
                            "subsample_info": [
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 4682,
                                    "library_subsample_rates": [
                                        0.09999704799218119
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 5000,
                                    "library_subsample_rates": [
                                        0.1067888167366309
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 9364,
                                    "library_subsample_rates": [
                                        0.19999409598436238
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 14046,
                                    "library_subsample_rates": [
                                        0.2999911439765436
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 18729,
                                    "library_subsample_rates": [
                                        0.40000954973207203
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 20000,
                                    "library_subsample_rates": [
                                        0.4271552669465236
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 23411,
                                    "library_subsample_rates": [
                                        0.5000065977242533
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 28093,
                                    "library_subsample_rates": [
                                        0.6000036457164344
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 32775,
                                    "library_subsample_rates": [
                                        0.7000006937086155
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 37457,
                                    "library_subsample_rates": [
                                        0.7999977417007967
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 42139,
                                    "library_subsample_rates": [
                                        0.8999947896929779
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 46821,
                                    "library_subsample_rates": [
                                        1.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 4682,
                                    "library_subsample_rates": [
                                        0.16817868302579034
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 5000,
                                    "library_subsample_rates": [
                                        0.17960132745171972
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 9364,
                                    "library_subsample_rates": [
                                        0.3363573660515807
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 14046,
                                    "library_subsample_rates": [
                                        0.504536049077371
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 18729,
                                    "library_subsample_rates": [
                                        0.6727506523686517
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 20000,
                                    "library_subsample_rates": [
                                        0.7184053098068789
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 23411,
                                    "library_subsample_rates": [
                                        0.840929335394442
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 28093,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 32775,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 37457,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 42139,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 46821,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS/fork0/chnk1",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "valexp": "REPORT_MOLECULES.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "molecule_info",
                            "node": "REPORT_MOLECULES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join-udfa1947ba6/files/output.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "FILTER_BARCODES.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_barcodes.csv",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/counter/subsample_reads"
    },
    {
        "name": "SUMMARIZE_BASIC_REPORTS",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "count_genes_reporter_summary",
                            "type": "json",
                            "valexp": "COUNT_GENES.reporter_summary",
                            "mode": "reference",
                            "output": "reporter_summary",
                            "sweep": false,
                            "sweepRootId": "count_genes_reporter_summary",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-udfa19442f4/files/reporter_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "raw_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "COUNT_GENES.matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_gene_bc_matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-udfa19442f4/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/refdata-cellranger-mm10-3.0.0",
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "SUMMARIZE_READ_REPORTS.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "extract_reads_summary",
                            "type": "json",
                            "valexp": "SUMMARIZE_READ_REPORTS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "extract_reads_summary",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/join-udfa193a13b/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "attach_bcs_and_umis_summary",
                            "type": "json",
                            "valexp": "ATTACH_BCS_AND_UMIS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "attach_bcs_and_umis_summary",
                            "node": "ATTACH_BCS_AND_UMIS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/join-udfa193d804/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "mark_duplicates_summary",
                            "type": "json",
                            "valexp": "MARK_DUPLICATES.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "mark_duplicates_summary",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/join-udfa19437e1/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "filter_barcodes_summary",
                            "type": "json",
                            "valexp": "FILTER_BARCODES.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "filter_barcodes_summary",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "subsample_molecules_summary",
                            "type": "json",
                            "valexp": "SUBSAMPLE_READS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "subsample_molecules_summary",
                            "node": "SUBSAMPLE_READS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS/fork0/join-udfa1948c4d/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "SUMMARIZE_READ_REPORTS.align",
                            "mode": "reference",
                            "output": "align",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": 255
                            },
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "FILTER_BARCODES.filtered_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_h5.h5",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/counter/summarize_basic_reports"
    },
    {
        "name": "SUMMARIZE_READ_REPORTS",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS",
        "state": "complete",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk00-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk01-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk02-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk03-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk04-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk05-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk06-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk07-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk08-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk09-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk10-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk11-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk12-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk13-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk14-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk15-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk16-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk17-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk18-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk19-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk20-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk21-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk22-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk23-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk24-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk25-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk26-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk27-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk28-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk29-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk30-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk31-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk32-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk33-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk34-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk35-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk36-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk37-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk38-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk39-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk40-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk41-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk42-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk43-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk44-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk45-udfa1937459/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "EXTRACT_READS.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "library_types",
                            "type": "string",
                            "valexp": "EXTRACT_READS.library_types",
                            "mode": "reference",
                            "output": "library_types",
                            "sweep": false,
                            "sweepRootId": "library_types",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "library_ids",
                            "type": "string",
                            "valexp": "EXTRACT_READS.library_ids",
                            "mode": "reference",
                            "output": "library_ids",
                            "sweep": false,
                            "sweepRootId": "library_ids",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "bam_comments",
                            "type": "string",
                            "valexp": "EXTRACT_READS.bam_comments",
                            "mode": "reference",
                            "output": "bam_comments",
                            "sweep": false,
                            "sweepRootId": "bam_comments",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "10x_bam_to_fastq:I1(BC:QT)",
                                "10x_bam_to_fastq:R1(CR:CY,UR:UY)",
                                "10x_bam_to_fastq:R2(SEQ:QUAL)"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "tags",
                            "type": "fastq",
                            "valexp": "EXTRACT_READS.tags",
                            "mode": "reference",
                            "output": "tags",
                            "sweep": false,
                            "sweepRootId": "tags",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk00-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk01-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk02-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk03-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk04-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk05-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk06-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk07-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk08-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk09-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk10-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk11-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk12-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk13-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk14-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk15-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk16-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk17-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk18-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk19-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk20-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk21-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk22-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk23-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk24-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk25-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk26-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk27-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk28-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk29-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk30-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk31-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk32-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk33-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk34-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk35-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk36-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk37-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk38-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk39-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk40-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk41-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk42-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk43-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk44-udfa1937459/files/tags.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk45-udfa1937459/files/tags.fastq/1.fastq.lz4"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "extract_reads_summary",
                            "type": "json",
                            "valexp": "EXTRACT_READS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "extract_reads_summary",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/join-udfa1937451/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "barcode_counts",
                            "type": "json",
                            "valexp": "EXTRACT_READS.barcode_counts",
                            "mode": "reference",
                            "output": "barcode_counts",
                            "sweep": false,
                            "sweepRootId": "barcode_counts",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/join-udfa1937451/files/barcode_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "feature_counts",
                            "type": "json",
                            "valexp": "EXTRACT_READS.feature_counts",
                            "mode": "reference",
                            "output": "feature_counts",
                            "sweep": false,
                            "sweepRootId": "feature_counts",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/join-udfa1937451/files/feature_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "read1s",
                            "type": "fastq",
                            "valexp": "EXTRACT_READS.reads",
                            "mode": "reference",
                            "output": "reads",
                            "sweep": false,
                            "sweepRootId": "read1s",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk00-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk01-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk02-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk03-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk04-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk05-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk06-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk07-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk08-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk09-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk10-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk11-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk12-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk13-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk14-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk15-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk16-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk17-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk18-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk19-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk20-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk21-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk22-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk23-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk24-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk25-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk26-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk27-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk28-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk29-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk30-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk31-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk32-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk33-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk34-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk35-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk36-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk37-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk38-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk39-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk40-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk41-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk42-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk43-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk44-udfa1937459/files/reads.fastq/1.fastq.lz4",
                                "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk45-udfa1937459/files/reads.fastq/1.fastq.lz4"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "self.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "read2s",
                            "type": "fastq",
                            "valexp": "EXTRACT_READS.read2s",
                            "mode": "reference",
                            "output": "read2s",
                            "sweep": false,
                            "sweepRootId": "read2s",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [],
                            "waiting": false
                        },
                        {
                            "id": "read_groups",
                            "type": "string",
                            "valexp": "EXTRACT_READS.read_groups",
                            "mode": "reference",
                            "output": "read_groups",
                            "sweep": false,
                            "sweepRootId": "read_groups",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1",
                                "tdtomato_run2:0:1:HJ5NCBGXB:1"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "EXTRACT_READS.align",
                            "mode": "reference",
                            "output": "align",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": 255
                            },
                            "waiting": false
                        },
                        {
                            "id": "retain_fastqs",
                            "type": "bool",
                            "valexp": "self.retain_fastqs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "retain_fastqs",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/counter/summarize_read_reports"
    },
    {
        "name": "_CRISPR_ANALYZER",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER",
        "type": "pipeline",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER",
        "state": "disabled",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.molecule_info",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "molecule_info",
                            "node": "REPORT_MOLECULES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join-udfa1947ba6/files/output.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_feature_counts_matrix",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "counter_metrics_json",
                            "type": "json",
                            "valexp": "_BASIC_SC_RNA_COUNTER.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "counter_metrics_json",
                            "node": "SUMMARIZE_BASIC_REPORTS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/join-udfa19493b2/files/summary.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "crispr_analysis_metrics",
                            "type": "json",
                            "valexp": "CALL_PROTOSPACERS.protospacer_call_metrics_json",
                            "mode": "reference",
                            "output": "protospacer_call_metrics_json",
                            "sweep": false,
                            "sweepRootId": "crispr_analysis_metrics",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "crispr_analysis",
                            "type": "path",
                            "valexp": "SUMMARIZE_CRISPR_ANALYSIS.crispr_analysis",
                            "mode": "reference",
                            "output": "crispr_analysis",
                            "sweep": false,
                            "sweepRootId": "crispr_analysis",
                            "node": "SUMMARIZE_CRISPR_ANALYSIS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CALL_PROTOSPACERS",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/CALL_PROTOSPACERS",
        "state": "disabled",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/CALL_PROTOSPACERS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/CALL_PROTOSPACERS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/CALL_PROTOSPACERS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/CALL_PROTOSPACERS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "self.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "valexp": "self.molecule_info",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "molecule_info",
                            "node": "REPORT_MOLECULES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join-udfa1947ba6/files/output.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_feature_counts_matrix",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_feature_counts_matrix",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "counter_metrics_json",
                            "type": "json",
                            "valexp": "self.counter_metrics_json",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "counter_metrics_json",
                            "node": "SUMMARIZE_BASIC_REPORTS",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/join-udfa19493b2/files/summary.json",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/feature/call_protospacers"
    },
    {
        "name": "SUMMARIZE_CRISPR_ANALYSIS",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS",
        "state": "disabled",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "perturbation_effects_by_target",
                            "type": "path",
                            "valexp": "_PERTURBATIONS_BY_TARGET.perturbation_effects_path",
                            "mode": "reference",
                            "output": "perturbation_effects_path",
                            "sweep": false,
                            "sweepRootId": "perturbation_effects_by_target",
                            "node": "_PERTURBATIONS_BY_TARGET",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_calls_per_cell",
                            "type": "csv",
                            "valexp": "CALL_PROTOSPACERS.protospacer_calls_per_cell",
                            "mode": "reference",
                            "output": "protospacer_calls_per_cell",
                            "sweep": false,
                            "sweepRootId": "protospacer_calls_per_cell",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_umi_thresholds_json",
                            "type": "json",
                            "valexp": "CALL_PROTOSPACERS.protospacer_umi_thresholds_json",
                            "mode": "reference",
                            "output": "protospacer_umi_thresholds_json",
                            "sweep": false,
                            "sweepRootId": "protospacer_umi_thresholds_json",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbations_efficiencies_by_target",
                            "type": "csv",
                            "valexp": "_PERTURBATIONS_BY_TARGET.perturbation_efficiencies",
                            "mode": "reference",
                            "output": "perturbation_efficiencies",
                            "sweep": false,
                            "sweepRootId": "perturbations_efficiencies_by_target",
                            "node": "_PERTURBATIONS_BY_TARGET",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_umi_thresholds_csv",
                            "type": "csv",
                            "valexp": "CALL_PROTOSPACERS.protospacer_umi_thresholds_csv",
                            "mode": "reference",
                            "output": "protospacer_umi_thresholds_csv",
                            "sweep": false,
                            "sweepRootId": "protospacer_umi_thresholds_csv",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbation_efficiencies_by_feature",
                            "type": "csv",
                            "valexp": "_PERTURBATIONS_BY_FEATURE.perturbation_efficiencies",
                            "mode": "reference",
                            "output": "perturbation_efficiencies",
                            "sweep": false,
                            "sweepRootId": "perturbation_efficiencies_by_feature",
                            "node": "_PERTURBATIONS_BY_FEATURE",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbation_effects_by_feature",
                            "type": "path",
                            "valexp": "_PERTURBATIONS_BY_FEATURE.perturbation_effects_path",
                            "mode": "reference",
                            "output": "perturbation_effects_path",
                            "sweep": false,
                            "sweepRootId": "perturbation_effects_by_feature",
                            "node": "_PERTURBATIONS_BY_FEATURE",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_calls_summary",
                            "type": "csv",
                            "valexp": "CALL_PROTOSPACERS.protospacer_calls_summary",
                            "mode": "reference",
                            "output": "protospacer_calls_summary",
                            "sweep": false,
                            "sweepRootId": "protospacer_calls_summary",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cells_per_protospacer",
                            "type": "json",
                            "valexp": "CALL_PROTOSPACERS.cells_per_protospacer",
                            "mode": "reference",
                            "output": "cells_per_protospacer",
                            "sweep": false,
                            "sweepRootId": "cells_per_protospacer",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/feature/summarize_crispr_analysis"
    },
    {
        "name": "_PERTURBATIONS_BY_FEATURE",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE",
        "state": "disabled",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "by_feature",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "by_feature",
                            "node": "_PERTURBATIONS_BY_FEATURE",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "ignore_multiples",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "ignore_multiples",
                            "node": "_PERTURBATIONS_BY_FEATURE",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_calls_per_cell",
                            "type": "csv",
                            "valexp": "CALL_PROTOSPACERS.protospacer_calls_per_cell",
                            "mode": "reference",
                            "output": "protospacer_calls_per_cell",
                            "sweep": false,
                            "sweepRootId": "protospacer_calls_per_cell",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_feature_counts_matrix",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_feature_counts_matrix",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/feature/measure_perturbations"
    },
    {
        "name": "_PERTURBATIONS_BY_TARGET",
        "fqname": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET",
        "type": "stage",
        "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET",
        "state": "disabled",
        "metadata": {
            "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "protospacer_calls_per_cell",
                            "type": "csv",
                            "valexp": "CALL_PROTOSPACERS.protospacer_calls_per_cell",
                            "mode": "reference",
                            "output": "protospacer_calls_per_cell",
                            "sweep": false,
                            "sweepRootId": "protospacer_calls_per_cell",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_feature_counts_matrix",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_feature_counts_matrix",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/ufrc/ewang/lancetdenes/libLTD/tdtomato_run2/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-udfa1947879/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "by_feature",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "by_feature",
                            "node": "_PERTURBATIONS_BY_TARGET",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "ignore_multiples",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "ignore_multiples",
                            "node": "_PERTURBATIONS_BY_TARGET",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET"
            },
            {
                "from": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES",
                "to": "ID.tdtomato_run2.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/apps/cellranger/3.1.0/cellranger-cs/3.1.0/mro/stages/feature/measure_perturbations"
    }
]